PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8171_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 662aa MW: 72382.9 Da PI: 6.9667 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.9 | 1.2e-15 | 463 | 509 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq cra_locus_8171_iso_2_len_3190_ver_3 463 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 509 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-20 | 457 | 526 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 459 | 508 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.75E-17 | 462 | 513 | No hit | No description |
Pfam | PF00010 | 4.2E-13 | 463 | 509 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-20 | 463 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 465 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MNHHCVPDFD MDDDYSIPTT SSSKLKSIKE DANDGQVVVQ SQNQRSFKKS PVGGSEGEIP 60 TQQQSSAAGG TRDIRSVETD AMAHQQQQQQ QQLFMHEDEM ASWLHYPIDD SSFDRDIYSD 120 LLYPPLSTSI SSTTTTTATI PGTNLPPREI RTTTTEIRPL PPPPPSAPVP PAPRPPVPLP 180 PKCTAIETPA KIQNFMHFSR LPKTRIEPGP SSSSKAAKEL TVVESNDSPR AEPESRVSQA 240 ADSAVHVSGG NVGCGTVSVT AAAAGTSTAG REFATPCDLT VTSSPGGSGD SFTASVEPHP 300 IQKPTRSPPR TANAREENPT MPNVTVRQAI KLSFIGLDHK LVEALQTIST PIWLGPLVQG 360 KNFFFSPFPS SFSSLLKFRI LNPEEFCYHC KEVXWXEMAR LIDKLPIISC RTILSFLALA 420 MLICCVNTCL NLSSLQDIEI ESTGGKKQPR GSTSTKRSRA AEVHNLSERR RRDRINEKMR 480 ALQELIPRCN KSDKASMLDE AIEYLKSLQL QVQMMSMGCG MIPMMYPGVQ QYIPAMGMGM 540 DMGMNRPMMP YPALMPTSGM PIPPAANMGP IYPVPAYHMQ PVPVPDPSRL QAAGQSDPML 600 SSMIPNIPNQ PRMPNYSDPY QQYMGLHQAQ MPIPQTQVAP QPPSNKPSSS RNVANPENQD 660 TG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 467 | 472 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027163807.1 | 1e-103 | transcription factor PIF1 | ||||
TrEMBL | A0A0P0C6U2 | 1e-154 | A0A0P0C6U2_CATRO; Phytochrome interacting factor 1 | ||||
STRING | Solyc09g063010.2.1 | 1e-91 | (Solanum lycopersicum) |