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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | cra_locus_8055_iso_4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 271aa MW: 30142 Da PI: 7.7555 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 43 | 8.3e-14 | 76 | 122 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h+e+E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +v+++++L
cra_locus_8055_iso_4_len_1370_ver_3 76 RSHSEAEKRRRDRINAQLATLRKLIPKS-----XKMDKAALLGSVVDHLNDL 122
78*************************8.....7***************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.491 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.6E-11 | 76 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.4E-15 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.49E-11 | 76 | 125 | No hit | No description |
| SuperFamily | SSF47459 | 2.09E-12 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 4.5E-11 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 8.5E-4 | 171 | 224 | No hit | No description |
| CDD | cd04873 | 4.24E-5 | 175 | 210 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 271 aa Download sequence Send to blast |
MDTWFSSVLP EDAAAWTHCQ AATEEVDGAF VVPQLSNNPG ETCSSFNFGG FPPSFPSPWL 60 MPIEGFVDGR ATSASRSHSE AEKRRRDRIN AQLATLRKLI PKSXKMDKAA LLGSVVDHLN 120 DLKRKAIEIS KVVMIPTDID EVTIDFLKDE EVGFSSSSSN SSSKQRQENR FLKASVCCDD 180 RPELFSELNR GLKSLRLSVV HADMISLGGR IRSILILCIQ NNDDEEDQGG GICMNTLKNS 240 LKLVLSRIAT SCATTNYRIK SRRQRFFLPS Y |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027162009.1 | 1e-106 | transcription factor bHLH51 | ||||
| TrEMBL | A0A068V0E3 | 1e-104 | A0A068V0E3_COFCA; Uncharacterized protein | ||||
| STRING | POPTR_0008s07090.1 | 1e-83 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5820 | 22 | 35 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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