PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_802_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 996aa MW: 111798 Da PI: 4.7835 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l cra_locus_802_iso_1_len_3830_ver_3 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l cra_locus_802_iso_1_len_3830_ver_3 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.8E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 4.01E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 7.55E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.68E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.2E-55 | 406 | 647 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARAXVSQ HKRKESKKES QGEAAQEARR 180 LASLQKRREL KAAGIDIRHR KRKRKGIDYN AEIPFEKRPP PGFYDVTDED HAVEQPKFPT 240 TIEELEGERR VDKEARLGKQ DIARNKIAQR QDAPSAILQA NKLNDPETVR KRSKLNLPAP 300 QIPDHELEAI AKIGIASDIM GSEDLTEGNA ATRALLASYA QTPMQGMTPL RTPQRTPAGK 360 QDAIMMEAEN QRRLTQSQTP LLGGDNPMLH PSDFSGVTPK KKEIQTPNPL LTPSSTPGPT 420 GLTPRIGMTP SGDAYSFGMT PKGTPLRDEL HINEDMDMHH SGNLGGPDSK KELLSGLRNL 480 PQPKNEYQIV MPAPPEDNEE SEEKIEEDMS DRLAREKAEE EARQQALLRK RSKVLQRELP 540 RPPAASVDLI RNSLLRADED KSTIVPPTLI EQADEMIRKE LLSLLEHDNV KYPLDEKAEK 600 EKKKGVKRKS TTVPVIEDFE ENEVKEADNL IKEEAYFLRL AMGHEREFFD DFVEAHRTCL 660 SDIMYFPTRN SYGLSSVAGN MEKLTALQSE FENVKKKVED DDKKAQRLEA KIKVLTKGYE 720 SRAEKLWNQI QATCDQMDTA STELECFQAL QKQEQLAAST RINYIWEEVQ KQKELERTLQ 780 ARYGNLTAEK ERTQQLIQHY RIQEHAALCR ALELAEAEKA AAAAAAAATN ECSANADSAL 840 PDEKTLPVDP ASEELPSHGT DTPHDQEVSR TPKLDIDESK PEPPSIDVAV TDNSEGTNSP 900 KDYGKPPVED PTDPTASSSP EPDVPEMVDE QKNTKDEEIV NEGNDTKAGN ADGGDDMMVD 960 EPKVVEENNS SEETTATPEN APQGPTDDDG NAQKDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 791 | 3 | 796 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDIRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084262.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A068TV99 | 0.0 | A0A068TV99_COFCA; Uncharacterized protein | ||||
STRING | XP_009631530.1 | 0.0 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
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