PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8025_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 148aa MW: 16804.9 Da PI: 10.4768 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 138.3 | 9e-43 | 23 | 119 | 74 | 170 |
YABBY 74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdi 147 + + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdi cra_locus_8025_iso_6_len_1360_ver_3 23 AANCNPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDI 96 444444444444444444444444445544555555556779******************************** PP YABBY 148 shreafsaaaknWahfPkihfgl 170 shreafs+aaknWahfP+ihfgl cra_locus_8025_iso_6_len_1360_ver_3 97 SHREAFSTAAKNWAHFPHIHFGL 119 *********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-41 | 19 | 119 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.36E-8 | 61 | 112 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.6E-5 | 67 | 113 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MAAAFQSLSS SSSSCSWQDV QGAANCNPPH HQYKMEMGSS SSRCNNKMAM RSSNIPKTTE 60 ERIVNRPPEK RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM 120 LETNNQPKLG HDQGSEKHRM PRAAFLKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238347.1 | 2e-67 | protein YABBY 15 | ||||
Refseq | XP_006600135.1 | 2e-67 | transcription factor YABBY15 isoform X1 | ||||
Refseq | XP_028209579.1 | 2e-67 | axial regulator YABBY 5-like isoform X1 | ||||
Refseq | XP_028209580.1 | 2e-67 | axial regulator YABBY 5-like isoform X2 | ||||
Swissprot | Q8GW46 | 2e-45 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0R0FBR6 | 4e-66 | A0A0R0FBR6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445G5F5 | 6e-66 | A0A445G5F5_GLYSO; Axial regulator YABBY 5 | ||||
TrEMBL | C6SYG8 | 6e-66 | C6SYG8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G12200.1 | 9e-67 | (Glycine max) |
Publications ? help Back to Top | |||
---|---|---|---|
|