PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8025_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | YABBY | ||||||||
Protein Properties | Length: 210aa MW: 23673.9 Da PI: 8.713 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206 | 1.4e-63 | 6 | 181 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntila...........vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66 + sseq+Cy+ CnfCn +la vsvP +slf +vtvrCGhCt+l svn+a a q l+++s cra_locus_8025_iso_3_len_1081_ver_3 6 DVSSEQLCYIPCNFCNIVLAiwyfvggyvtqVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSSSSS--SC 77 5789*************997555555555558********************************999997..45 PP YABBY 67 lkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqri 140 ++++ + + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqri cra_locus_8025_iso_3_len_1081_ver_3 78 SWQDVQGAANCNPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRI 151 5556666666666666666666555555555555655555555556789************************* PP YABBY 141 kasnPdishreafsaaaknWahfPkihfgl 170 ka+nPdishreafs+aaknWahfP+ihfgl cra_locus_8025_iso_3_len_1081_ver_3 152 KANNPDISHREAFSTAAKNWAHFPHIHFGL 181 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.0E-65 | 8 | 181 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-8 | 124 | 174 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 129 | 175 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSSCIDVSSE QLCYIPCNFC NIVLAIWYFV GGYVTQVSVP CSSLFDIVTV RCGHCTNLWS 60 VNMAAAFQSL SSSSSSCSWQ DVQGAANCNP PHHQYKMEMG SSSSRCNNKM AMRSSNIPKT 120 TEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 180 LMLETNNQPK LGHDQGSEKH RMPRAAFLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285328.1 | 1e-103 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D7TC40 | 1e-101 | D7TC40_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-102 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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