PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8025_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 200aa MW: 22446.5 Da PI: 8.725 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 225.4 | 1.5e-69 | 6 | 171 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkv 77 + sseq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+++s + ++++ + cra_locus_8025_iso_1_len_1051_ver_3 6 DVSSEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSSSSS-SSCSWQDVQGAANC 78 5789**************************************************99998.44455556666666 PP YABBY 78 eeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishre 151 + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishre cra_locus_8025_iso_1_len_1051_ver_3 79 NPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHRE 152 66666666666666665555556655555555666789************************************ PP YABBY 152 afsaaaknWahfPkihfgl 170 afs+aaknWahfP+ihfgl cra_locus_8025_iso_1_len_1051_ver_3 153 AFSTAAKNWAHFPHIHFGL 171 *****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.3E-71 | 8 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.32E-8 | 113 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 119 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MSSCIDVSSE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 SSSSSSCSWQ DVQGAANCNP PHHQYKMEMG SSSSRCNNKM AMRSSNIPKT TEERIVNRPP 120 EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQPK 180 LGHDQGSEKH RMPRAAFLKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285328.1 | 1e-106 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | D7TC40 | 1e-105 | D7TC40_VITVI; Uncharacterized protein | ||||
STRING | VIT_11s0016g05590.t01 | 1e-106 | (Vitis vinifera) |
Publications ? help Back to Top | |||
---|---|---|---|
|