PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7965_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 761aa MW: 87081.9 Da PI: 6.6819

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7965_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79	8.6e-25	109	195	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g++++++ + ++r+ +t+Cka++++k+++dg cra_locus_7965_iso_3_len_2281_ver_3 109 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRKSSMS----VTPRSCPKTDCKASMHMKRRQDG 178 5**************************************999888....999**************** PP FAR1 75 kwevtkleleHnHelap 91 kw+++++++eHnHe++p cra_locus_7965_iso_3_len_2281_ver_3 179 KWYIYSVVKEHNHEICP 195 ************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-22	109	195	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-18	277	368	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	557	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-5	559	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.1E-5	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
XVSLPVLPCT ESLVKWKLDM LLVFSMDINL EMPCIHDDKI DNAINIADIS TSTDAFHRED 60 DGPSLSKEVN TERDGIGVEV NASDEKSANL SYYEPHEGLE FETKEAAYSF YREYARSVGF 120 GITIKASRRS KKSGKFIDVK IACSRFGSKR KSSMSVTPRS CPKTDCKASM HMKRRQDGKW 180 YIYSVVKEHN HEICPNDFYS AISGRYKKSG SINCQKKGLQ LALDPEDVKL LLDTFILLQS 240 ETSDFFYAVD FDSEKRMRNV FWIDGKGRND YGNFFDVVFF DTSCLKDNYK VPFLPVVGVN 300 QHFQYILLGC ALIGDESSST LSWLMRTWLR AMGGQSPTVV ITADDISVKE AVADVFPDSC 360 HCFSLWLVLR KISQNLSHKV QQFPNLMSKF DKCIHQSRTD EEFQKRWHKM VDKFELGDDE 420 WIRSLYDDRK KWVPTYMRGV FLGGLTTFQQ SEIVSSFFDK YIHRDTTFKE FIDQYKLFLN 480 HRCKAEDRDE FETRHQKPML KSLSPFEKQM CTVYTPAIFK KFQAEVLGSF GCNLKKEAED 540 EMCILFRVND LDGHDSFTVT LNKERPDVSC LCCSFEYRGF LCRHAMRVLQ ISGVSKIPSP 600 YILKRWTIDA KISDIESTLS SRLNNRIQRL NDLCKLGVKL GEEGSLSGET YDIALFAIEE 660 ALKHCVDRNN SAGSVLEKNM LARQNFLSGE DGNKGNSRTK VQDVEAPNVE IQNIGEKMEQ 720 LKQRTPTLES AYVPHPVVQG MELGNRTPII DSYCDAEPGI Q

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

XVSLPVLPCT ESLVKWKLDM LLVFSMDINL EMPCIHDDKI DNAINIADIS TSTDAFHRED  60
DGPSLSKEVN TERDGIGVEV NASDEKSANL SYYEPHEGLE FETKEAAYSF YREYARSVGF  120
GITIKASRRS KKSGKFIDVK IACSRFGSKR KSSMSVTPRS CPKTDCKASM HMKRRQDGKW  180
YIYSVVKEHN HEICPNDFYS AISGRYKKSG SINCQKKGLQ LALDPEDVKL LLDTFILLQS  240
ETSDFFYAVD FDSEKRMRNV FWIDGKGRND YGNFFDVVFF DTSCLKDNYK VPFLPVVGVN  300
QHFQYILLGC ALIGDESSST LSWLMRTWLR AMGGQSPTVV ITADDISVKE AVADVFPDSC  360
HCFSLWLVLR KISQNLSHKV QQFPNLMSKF DKCIHQSRTD EEFQKRWHKM VDKFELGDDE  420
WIRSLYDDRK KWVPTYMRGV FLGGLTTFQQ SEIVSSFFDK YIHRDTTFKE FIDQYKLFLN  480
HRCKAEDRDE FETRHQKPML KSLSPFEKQM CTVYTPAIFK KFQAEVLGSF GCNLKKEAED  540
EMCILFRVND LDGHDSFTVT LNKERPDVSC LCCSFEYRGF LCRHAMRVLQ ISGVSKIPSP  600
YILKRWTIDA KISDIESTLS SRLNNRIQRL NDLCKLGVKL GEEGSLSGET YDIALFAIEE  660
ALKHCVDRNN SAGSVLEKNM LARQNFLSGE DGNKGNSRTK VQDVEAPNVE IQNIGEKMEQ  720
LKQRTPTLES AYVPHPVVQG MELGNRTPII DSYCDAEPGI Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002268998.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_010648204.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
Refseq	XP_019074674.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2
TrEMBL	F6HTN2	0.0	F6HTN2_VITVI; Uncharacterized protein
STRING	VIT_03s0017g01830.t01	0.0	(Vitis vinifera)