PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7965_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family FAR1
Protein Properties Length: 762aa    MW: 87320.8 Da    PI: 6.7738
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7965_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1798.6e-25110196191
                                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                                          +fY+eYA++vGF +++++s++sk++g++++ +  Cs+ g++++++ +     ++r+  +t+Cka++++k+++dg
  cra_locus_7965_iso_1_len_2284_ver_3 110 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRKSSMS----VTPRSCPKTDCKASMHMKRRQDG 179
                                          5****************************************999888....999******************** PP

                                 FAR1  75 kwevtkleleHnHelap 91 
                                          kw+++++++eHnHe++p
  cra_locus_7965_iso_1_len_2284_ver_3 180 KWYIYSVVKEHNHEICP 196
                                          **************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-22110196IPR004330FAR1 DNA binding domain
PfamPF105511.5E-18278369IPR018289MULE transposase domain
PROSITE profilePS509669.705558594IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-5560591IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-5569596IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
XQKYFSAXFG TESLVKWKLD MLLVFSMDIN LEMPCIHDDK IDNAINIADI STSTDAFHRE  60
DDGPSLSKEV NTERDGIGVE VNASDEKSAN LSYYEPHEGL EFETKEAAYS FYREYARSVG  120
FGITIKASRR SKKSGKFIDV KIACSRFGSK RKSSMSVTPR SCPKTDCKAS MHMKRRQDGK  180
WYIYSVVKEH NHEICPNDFY SAISGRYKKS GSINCQKKGL QLALDPEDVK LLLDTFILLQ  240
SETSDFFYAV DFDSEKRMRN VFWIDGKGRN DYGNFFDVVF FDTSCLKDNY KVPFLPVVGV  300
NQHFQYILLG CALIGDESSS TLSWLMRTWL RAMGGQSPTV VITADDISVK EAVADVFPDS  360
CHCFSLWLVL RKISQNLSHK VQQFPNLMSK FDKCIHQSRT DEEFQKRWHK MVDKFELGDD  420
EWIRSLYDDR KKWVPTYMRG VFLGGLTTFQ QSEIVSSFFD KYIHRDTTFK EFIDQYKLFL  480
NHRCKAEDRD EFETRHQKPM LKSLSPFEKQ MCTVYTPAIF KKFQAEVLGS FGCNLKKEAE  540
DEMCILFRVN DLDGHDSFTV TLNKERPDVS CLCCSFEYRG FLCRHAMRVL QISGVSKIPS  600
PYILKRWTID AKISDIESTL SSRLNNRIQR LNDLCKLGVK LGEEGSLSGE TYDIALFAIE  660
EALKHCVDRN NSAGSVLEKN MLARQNFLSG EDGNKGNSRT KVQDVEAPNV EIQNIGEKME  720
QLKQRTPTLE SAYVPHPVVQ GMELGNRTPI IDSYCDAEPG IQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268998.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2
RefseqXP_010648204.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2
RefseqXP_019074674.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2
TrEMBLF6HTN20.0F6HTN2_VITVI; Uncharacterized protein
STRINGVIT_03s0017g01830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103