PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_79463_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17367.3 Da PI: 4.8783 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.6 | 8.9e-25 | 4 | 50 | 5 | 51 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +k+ rqvtfskRrng+lKKA+ELSvLCd+eva +if +gkly+y+s cra_locus_79463_iso_1_len_461_ver_3 4 DKIARQVTFSKRRNGLLKKANELSVLCDVEVAAMIFCDRGKLYDYCS 50 7899*****************************************96 PP | |||||||
2 | K-box | 39 | 3.3e-14 | 77 | 152 | 12 | 87 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 ++++ + +++ e Lq R l +++Ls+++Lq+Le+q+ ++l + Rs+K+ lll++++ l++kek cra_locus_79463_iso_1_len_461_ver_3 77 QNQQDQCSKYEGFLTSGELLQIVERDLEEPFIDQLSVNDLQHLENQVVEALIQTRSTKTCLLLDSVSSLKEKEK 150 4567777778888888899999999999999******************************************9 PP K-box 86 el 87 + cra_locus_79463_iso_1_len_461_ver_3 151 SS 152 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.352 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-21 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-24 | 4 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-22 | 4 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 14 | 29 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-15 | 29 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.468 | 79 | 154 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.5E-9 | 91 | 152 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
RPGDKIARQV TFSKRRNGLL KKANELSVLC DVEVAAMIFC DRGKLYDYCS SSSLPEMLRR 60 YHSSVEAEPS SSTGVLQNQQ DQCSKYEGFL TSGELLQIVE RDLEEPFIDQ LSVNDLQHLE 120 NQVVEALIQT RSTKTCLLLD SVSSLKEKEK SSEX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022885395.1 | 3e-61 | agamous-like MADS-box protein AGL27 | ||||
Swissprot | P29383 | 4e-34 | AGL3_ARATH; Agamous-like MADS-box protein AGL3 | ||||
TrEMBL | A0A1S3X7B1 | 2e-55 | A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1 | ||||
TrEMBL | A0A1U7XSL9 | 2e-55 | A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1 | ||||
STRING | XP_009795052.1 | 4e-56 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Publications ? help Back to Top | |||
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