PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7910_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25116.5 Da PI: 8.7499 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 75 | 119 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L cra_locus_7910_iso_8_len_1321_ver_3 75 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 119 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.40E-10 | 68 | 124 | No hit | No description |
SuperFamily | SSF47459 | 5.37E-16 | 68 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.323 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-16 | 72 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-7 | 75 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
XWWGWGVGWG SKLLPRAYRG NNIKKLLMLD NPKCCXILWQ AFQGQPTPST AVTLPHPPAI 60 RPRVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD EILDYVKFLR 120 LQVKVLSMSR LGGAGAVAQL VADIPLQSVE GDNGESRSNQ HVWEKWSNEE TEQEVAKLMG 180 EDVGAAMQYL QSKSLCIMPI SLAALICPSP HTDDPTIVKP EPAAPS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 79 | 84 | RLRRER |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116404.1 | 1e-117 | transcription factor UNE12-like | ||||
Refseq | XP_027165042.1 | 1e-117 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 3e-73 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A068VJD0 | 1e-116 | A0A068VJD0_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034840 | 1e-113 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
---|---|---|---|
|