PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7910_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 33076 Da PI: 5.6012 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.7e-10 | 157 | 201 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L cra_locus_7910_iso_2_len_1701_ver_3 157 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 201 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.52E-11 | 150 | 206 | No hit | No description |
SuperFamily | SSF47459 | 9.55E-16 | 150 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.323 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 154 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-7 | 157 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAGNQPPEGY ATDDFLEQIL AIPSYSGLPV VNNEVGGSCS SDTASLTSAV SQLSSGAGAG 60 ALHQSQHFPL GLSLDNGRDD VSDTGAFGXK TKRESINIGS LYPAFEQLQP HAIRHGVPQV 120 QQAFQGQPTP STAVTLPHPP AIRPRVRARR GQATDPHSIA ERLRRERISE RIKALQELVP 180 SCNKTDRAAM LDEILDYVKF LRLQVKVLSM SRLGGAGAVA QLVADIPLQS VEGDNGESRS 240 NQHVWEKWSN EETEQEVAKL MGEDVGAAMQ YLQSKSLCIM PISLAALICP SPHTDDPTIV 300 KPEPAAPS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 166 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116404.1 | 1e-180 | transcription factor UNE12-like | ||||
Refseq | XP_027165042.1 | 1e-180 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-78 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A068VJD0 | 1e-179 | A0A068VJD0_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034840 | 1e-153 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6421 | 19 | 32 |
Publications ? help Back to Top | |||
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