PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7910_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 263aa MW: 29614.5 Da PI: 8.9752

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7910_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.4e-10	75	119	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L cra_locus_7910_iso_1_len_1431_ver_3 75 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 119 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.12E-10	68	124	No hit	No description
SuperFamily	SSF47459	7.2E-16	68	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.323	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-16	72	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	75	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	76	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
XWWGWGVGWG SKLLPRAYRG NNIKKLLMLD NPKCCXILWQ AFQGQPTPST AVTLPHPPAI 60 RPRVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD EILDYVKFLR 120 LQVKVLSMSR LGGAGAVAQL VADIPLQSVE VIIRNXYFFS VSIFAIQMIK SNDQLYVLEF 180 LNSEIFRVTM VKVDQISXVW EKWSNEETEQ EVAKLMGEDV GAAMQYLQSK SLCIMPISLA 240 ALICPSPHTD DPTIVKPEPA APS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076653.1	1e-104	transcription factor UNE12
Swissprot	O22768	1e-64	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A068VJD0	1e-102	A0A068VJD0_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400034840	4e-96	(Solanum tuberosum)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]