PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_78855_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21975.9 Da PI: 5.1705 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.1e-42 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvy cra_locus_78855_iso_1_len_659_ver_3 37 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVY 110 7************************************************************************* PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G++g i +lq+q+++l+a+la+ ++e cra_locus_78855_iso_1_len_659_ver_3 111 GCAGAICQLQKQVNELQAQLAKSQAE 136 *********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.379 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-42 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MESSDTTTIT SPSSSSVSPS SSSSPPPPPP PSVVVSPCAA CKILRRRCAE KCVLAPYFPP 60 NDPIKFTTAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ 120 KQVNELQAQL AKSQAELLNM QCQQANLMAL ICMEMSSDPQ PQPQQQQSPT DNFINHGLIQ 180 TTNLNFFDDN HPGALWEPLW T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 36 | 144 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 36 | 144 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610820.1 | 1e-96 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016509518.1 | 1e-96 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 6e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1S4D850 | 3e-95 | A0A1S4D850_TOBAC; LOB domain-containing protein 1-like | ||||
STRING | XP_009610820.1 | 5e-96 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |