PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7877_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 299aa    MW: 33138.6 Da    PI: 9.4115
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7877_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.6e-19153186134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  cra_locus_7877_iso_9_len_1336_ver_3 153 CTDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 186
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.651147183IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-12147187No hitNo description
SMARTSM004016.2E-20147198IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15151186IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.34E-13152184No hitNo description
PfamPF003201.0E-16153186IPR000679Zinc finger, GATA-type
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
XLSIHHRVFF DSSTTPPPPP DQTQFYTTTT TMLHHPPPHH QDHQDENQAG SYDDDLQGKE  60
GGNKRLKLTL WKNNNEKQEN NIPAAKWMSS KMRIMHKMKN STTTGHNNNK VEDHHHHQQQ  120
KQGSYNSTTS FEGDHNLSSC SYNNNSNPPV RVCTDCNTTK TPLWRSGPKG PKSLCNACGI  180
RQRKARRAMA AAAAAATAGG TSQVNYETAT TSSTLKMKEK KNNGGRGSGV HLKKGCKMTS  240
AAESSSSADD HNEEEKKKNV FEDFLLNLSK NLAFHRVFPQ DEKEAAILLM ALSCGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.24e-65LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A068U3P21e-57A0A068U3P2_COFCA; Uncharacterized protein
STRINGXP_010262144.14e-50(Nelumbo nucifera)