PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7877_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 302aa    MW: 33718.3 Da    PI: 9.5157
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7877_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.7e-19156189134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          C+ C+ttkTplWR+gp g+k+LCnaCG+++rk +
  cra_locus_7877_iso_5_len_1347_ver_3 156 CTDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 189
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-20150201IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651150186IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12150190No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15154189IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-12155187No hitNo description
PROSITE patternPS003440156181IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16156189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
SFYSSSCFLR LIYYSSSSAR SNPILYYYYY XXXXXXXXXP PHHQDHQDEN QAGSYDDDLQ  60
GKEGGNKRLK LTLWKNNNEK QENNIPAAKW MSSKMRIMHK MKNSTTTGHN NNKVEDHHHH  120
QQQKQGSYNS TTSFEGDHNL SSCSYNNNSN PPVRVCTDCN TTKTPLWRSG PKGPKSLCNA  180
CGIRQRKARR AMAAAAAAAT AGGTSQVNYE TATTSSTLKM KEKKNNGGRG SGVHLKKGCK  240
MTSAAESSSS ADDHNEEEKK KNVFEDFLLN LSKNLAFHRV FPQDEKEAAI LLMALSCGLV  300
HG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.21e-63LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A068U3P22e-58A0A068U3P2_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_93.282e-50(Carica papaya)
STRINGXP_010262144.12e-50(Nelumbo nucifera)