PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_778_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 1030aa MW: 113062 Da PI: 5.5282

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_778_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	617	668	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ cra_locus_778_iso_3_len_3340_ver_3 617 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 668 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	607	688	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	620	668	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-23	927	1014	No hit	No description
PROSITE profile	PS51745	24.855	928	1010	IPR000270	PB1 domain
Pfam	PF00564	3.2E-19	928	1009	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-26	928	1009	No hit	No description
SMART	SM00666	1.1E-26	928	1010	IPR000270	PB1 domain
CDD	cd06407	4.62E-38	929	1009	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MAEPEEPEQQ HQHQKFLHPH PRSMEILTSF QHQPPAERDN IMMDLDLDLD SSWTFDQIFS 60 AAAAAATTTN NNSTSSFLLS TTSEQPCSPL WAFSDENNED KPSGNSTTAL GLRLSDYPRL 120 VNCNNDSITG NPSRNDEKRR FTTPLLELAA LDYPDASCII KERMTQALRF FKDSTESHVL 180 AQVWAPVKNG GRCVLTTSGQ PFVLDPKSNG LYQYRMVSLM YVFSVDGETN GVLGLPGRVF 240 RQKLPEWTPN VQYYSSEEFP RLNHALHYNV RGTLALPVFE PSGQNCIGVL ELIMTSQKIN 300 YAPEVDKVCK ALEAVNLKSS EILDHSNVQI CNEGRQNALA EILEILTVVC ETHKLPLAQT 360 WVPCQHRSVL ANGGGLRKTC SSFDGSCMGQ VCMSTTDVAF YVVDAHMWGF REACAEHHLQ 420 KGQGVAGRAF ESHNSCFCTD VTQFCKNDYP LVHYARMFGL TSCFAICLRS SYTGDDDYVL 480 EFFLPSIVLD HGDQQTLLDS LLVTMKPHLG SLRIASGKDL EHEWRSIEIV KSLVEEKFDS 540 RAEVFQRTRS STSPPGPTAF TNGEMVHLNS MAEQRSALVD SANDERHSGA TAGHQSTASV 600 VENKETGKKT ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW 660 PSRKINKVNR SLTKLKRVIE SVQGAEGAFT LTSLAASSIP VAVGSVPWTA GGLNESSPQD 720 QPGSGPSEFP GDRNDESPLP GSGSDGKAET SNQLLGGGTG ENEEHVSKSA HFLPCEGSHR 780 SKTQSGSREE SAGTPTSQGS CQGSPYIGNE SSPRNELVVS PSQEQLMKVG GSMEFRYQPT 840 GAINLSAAFS MDAFMNVQHQ EPFGGMLVED AGSCHDLKNL CSNGDALFDE RLPDYSWNNP 900 PSSEPIPKGS TTPADRMPQF SARPELKTIT IKATYREDII RFRLPLDSGI DKLKEEIAKR 960 LKLDVGTFEI KYLDDDHEWV LIACDADLQE CVDISKSSGS NMIRLLVHDL MPALGSSCES 1020 SGECGGLGCK

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MAEPEEPEQQ HQHQKFLHPH PRSMEILTSF QHQPPAERDN IMMDLDLDLD SSWTFDQIFS  60
AAAAAATTTN NNSTSSFLLS TTSEQPCSPL WAFSDENNED KPSGNSTTAL GLRLSDYPRL  120
VNCNNDSITG NPSRNDEKRR FTTPLLELAA LDYPDASCII KERMTQALRF FKDSTESHVL  180
AQVWAPVKNG GRCVLTTSGQ PFVLDPKSNG LYQYRMVSLM YVFSVDGETN GVLGLPGRVF  240
RQKLPEWTPN VQYYSSEEFP RLNHALHYNV RGTLALPVFE PSGQNCIGVL ELIMTSQKIN  300
YAPEVDKVCK ALEAVNLKSS EILDHSNVQI CNEGRQNALA EILEILTVVC ETHKLPLAQT  360
WVPCQHRSVL ANGGGLRKTC SSFDGSCMGQ VCMSTTDVAF YVVDAHMWGF REACAEHHLQ  420
KGQGVAGRAF ESHNSCFCTD VTQFCKNDYP LVHYARMFGL TSCFAICLRS SYTGDDDYVL  480
EFFLPSIVLD HGDQQTLLDS LLVTMKPHLG SLRIASGKDL EHEWRSIEIV KSLVEEKFDS  540
RAEVFQRTRS STSPPGPTAF TNGEMVHLNS MAEQRSALVD SANDERHSGA TAGHQSTASV  600
VENKETGKKT ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW  660
PSRKINKVNR SLTKLKRVIE SVQGAEGAFT LTSLAASSIP VAVGSVPWTA GGLNESSPQD  720
QPGSGPSEFP GDRNDESPLP GSGSDGKAET SNQLLGGGTG ENEEHVSKSA HFLPCEGSHR  780
SKTQSGSREE SAGTPTSQGS CQGSPYIGNE SSPRNELVVS PSQEQLMKVG GSMEFRYQPT  840
GAINLSAAFS MDAFMNVQHQ EPFGGMLVED AGSCHDLKNL CSNGDALFDE RLPDYSWNNP  900
PSSEPIPKGS TTPADRMPQF SARPELKTIT IKATYREDII RFRLPLDSGI DKLKEEIAKR  960
LKLDVGTFEI KYLDDDHEWV LIACDADLQE CVDISKSSGS NMIRLLVHDL MPALGSSCES  1020
SGECGGLGCK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085451.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A068UUL3	0.0	A0A068UUL3_COFCA; Uncharacterized protein
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]