PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_77643_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20152.5 Da PI: 8.2365 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.1 | 1.7e-11 | 2 | 30 | 21 | 49 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyey 49 +KKA+EL +LC++e+a+i+fs+ k++ + cra_locus_77643_iso_1_len_545_ver_3 2 FKKAYELTTLCGVEIAIIVFSPGKKVFSF 30 9*********************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.629 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0027 | 2 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-14 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-12 | 2 | 30 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
XFKKAYELTT LCGVEIAIIV FSPGKKVFSF GHPNVVPIID RFQNPNSSPS PGARSSQIVE 60 AHRNASVREL NIQLEELQEQ LDDQKKRGED LGKMRKASQG RCWWEAPVTQ LGLQEVEQLK 120 EAMEELKKNT AKFAEKIILE ASHSNPFLGA SSSRGAVGPN TINIDSKIPG LGLSMTAHGY 180 TLX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101427.1 | 4e-76 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A068TPM5 | 5e-67 | A0A068TPM5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400013136 | 6e-57 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |