PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_772_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GeBP
Protein Properties Length: 437aa    MW: 48588.1 Da    PI: 4.6532
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_772_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.61.1e-34196289598
                              DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                                         r+wseeD i+lL G id+++k+g++ps+di a++ef+k+++++++sksql eK+rrLK+Kf  +vkk+++g++ +
  cra_locus_772_iso_2_len_1553_ver_3 196 RVWSEEDVIALLEGTIDYQKKNGVDPSADIAALHEFIKGKLHADMSKSQLYEKVRRLKQKFFANVKKVENGEDSV 270
                                         9************************************************************************** PP

                              DUF573  80 fskehdqkifelskkiWgs 98 
                                         fsk+h++k+f+lskkiWg+
  cra_locus_772_iso_2_len_1553_ver_3 271 FSKPHESKTFDLSKKIWGT 289
                                         *****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-32196288IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
XFRSRPGDIY LNXNPNPNLP YYASCSKILS DYPFGLPSED NGTEEVPSSS SSSSSESEEE  60
EEETSEEESE GESEVEEKEQ NKEKMIKIQP SQVNKKSSVQ KQTTPPPLAP QSEEQEEESG  120
SDEEEGEKSD SPPSPNASDF LVKAVTPTKL ASKDGTTSSK RTSDVPKDEG KDLREKKRAK  180
INEEQKKEKA SVGAGRVWSE EDVIALLEGT IDYQKKNGVD PSADIAALHE FIKGKLHADM  240
SKSQLYEKVR RLKQKFFANV KKVENGEDSV FSKPHESKTF DLSKKIWGTG SQSNDGGVDS  300
VNPKVNAGKM KKGVKIGSIS GIVKEEEKKD VAKGGRTSVT AKEVEKDDVD MDDLDDGDFQ  360
AKYPHFSQSF DLDGSSFYPD PVLSVLKENL SLIDSVKARE FDEKWKNLRE QEAEFFLKRI  420
TLISEQTELI LNAGKKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041