PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_772_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GeBP
Protein Properties Length: 396aa    MW: 44059 Da    PI: 4.7993
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_772_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.89e-35155248598
                              DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 
                                         r+wseeD i+lL G id+++k+g++ps+di a++ef+k+++++++sksql eK+rrLK+Kf  +vkk+++g++ +
  cra_locus_772_iso_1_len_1551_ver_3 155 RVWSEEDVIALLEGTIDYQKKNGVDPSADIAALHEFIKGKLHADMSKSQLYEKVRRLKQKFFANVKKVENGEDSV 229
                                         9************************************************************************** PP

                              DUF573  80 fskehdqkifelskkiWgs 98 
                                         fsk+h++k+f+lskkiWg+
  cra_locus_772_iso_1_len_1551_ver_3 230 FSKPHESKTFDLSKKIWGT 248
                                         *****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-32155247IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAPKKSLPPP PPPPESEEEE EETSEEESEG ESEVEEKEQN KEKMIKIQPS QVNKKSSVQK  60
QTTPPPLAPQ SEEQEEESGS DEEEGEKSDS PPSPNASDFL VKAVTPTKLA SKDGTTSSKR  120
TSDVPKDEGK DLREKKRAKI NEEQKKEKAS VGAGRVWSEE DVIALLEGTI DYQKKNGVDP  180
SADIAALHEF IKGKLHADMS KSQLYEKVRR LKQKFFANVK KVENGEDSVF SKPHESKTFD  240
LSKKIWGTGS QSNDGGVDSV NPKVNAGKMK KGVKIGSISG IVKEEEKKDV AKGGRTSVTA  300
KEVEKDDVDM DDLDDGDFQA KYPHFSQSFD LDGSSFYPDP VLSVLKENLS LIDSVKAREF  360
DEKWKNLREQ EAEFFLKRIT LISEQTELIL NAGKKR