PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7726_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 370aa MW: 42126.2 Da PI: 4.4938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7726_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	196	239	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L cra_locus_7726_iso_6_len_1528_ver_3 196 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 239 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-16	194	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-9	196	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-15	197	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-4	197	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MEYYGYEQEG FMEELLAMRS SHEPWPPGLA INDDFSNING GGGWINRHNE LNYWTDNSML 60 VPQTFEEGYS SNFTIDNQTL LNCSFNELYS SFRDELSPPP EFTDSSYNNN NNNNTKFGTP 120 PFPSPEDLSI MEDDVDQLSF LENCLQKKKE MEPCKMEPSQ LSAETAPLPV DFSIGSVGQE 180 KRNKSKKISG QPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL 240 ERINQLQEEM EMDKVGSSSN DQPSLMNIFK DSKPNELLVR NSPKFEVERR NRDTRIEICC 300 AGGKQGLLLS TLTTLEALGL EIQQCVISCF ANDFSVQASC SEELEQREIL TSEDVKQALF 360 RNAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MEYYGYEQEG FMEELLAMRS SHEPWPPGLA INDDFSNING GGGWINRHNE LNYWTDNSML  60
VPQTFEEGYS SNFTIDNQTL LNCSFNELYS SFRDELSPPP EFTDSSYNNN NNNNTKFGTP  120
PFPSPEDLSI MEDDVDQLSF LENCLQKKKE MEPCKMEPSQ LSAETAPLPV DFSIGSVGQE  180
KRNKSKKISG QPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL  240
ERINQLQEEM EMDKVGSSSN DQPSLMNIFK DSKPNELLVR NSPKFEVERR NRDTRIEICC  300
AGGKQGLLLS TLTTLEALGL EIQQCVISCF ANDFSVQASC SEELEQREIL TSEDVKQALF  360
RNAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	QEKRNKSKK
2	198	205	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094470.1	1e-117	transcription factor bHLH93-like
Refseq	XP_027149913.1	1e-117	transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-82	BH093_ARATH; Transcription factor bHLH93
TrEMBL	J9UVQ2	1e-108	J9UVQ2_VITVI; Transcription factor bHLH
STRING	XP_010254652.1	1e-109	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]