PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7726_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 356aa MW: 40513.6 Da PI: 4.4787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7726_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	196	239	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L cra_locus_7726_iso_5_len_1632_ver_3 196 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 239 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-16	194	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-12	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	196	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-15	197	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.89E-5	197	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEYYGYEQEG FMEELLAMRS SHEPWPPGLA INDDFSNING GGGWINRHNE LNYWTDNSML 60 VPQTFEEGYS SNFTIDNQTL LNCSFNELYS SFRDELSPPP EFTDSSYNNN NNNNTKFGTP 120 PFPSPEDLSI MEDDVDQLSF LENCLQKKKE MEPCKMEPSQ LSAETAPLPV DFSIGSVGQE 180 KRNKSKKISG QPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL 240 ERINQLQEEM EMDKVGSSSN DQPSLMNIFK DSKPNELLVR NSPKFEVERR NRDTRIEICC 300 AGGKQGLLLS TLTTLEALGL EIQQCVISCF ANDFSVQASC SEVLLLTTIT LSCFIF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEYYGYEQEG FMEELLAMRS SHEPWPPGLA INDDFSNING GGGWINRHNE LNYWTDNSML  60
VPQTFEEGYS SNFTIDNQTL LNCSFNELYS SFRDELSPPP EFTDSSYNNN NNNNTKFGTP  120
PFPSPEDLSI MEDDVDQLSF LENCLQKKKE MEPCKMEPSQ LSAETAPLPV DFSIGSVGQE  180
KRNKSKKISG QPSKNLMAER RRRKRLNDRL SMLRSVVPKI SKMDRTSILG DTIDYMKELL  240
ERINQLQEEM EMDKVGSSSN DQPSLMNIFK DSKPNELLVR NSPKFEVERR NRDTRIEICC  300
AGGKQGLLLS TLTTLEALGL EIQQCVISCF ANDFSVQASC SEVLLLTTIT LSCFIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	QEKRNKSKK
2	198	205	ERRRRKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094470.1	4e-97	transcription factor bHLH93-like
Refseq	XP_027149913.1	4e-97	transcription factor bHLH93-like
TrEMBL	A0A1R3GHE5	2e-91	A0A1R3GHE5_9ROSI; Uncharacterized protein
STRING	VIT_18s0001g08040.t01	1e-91	(Vitis vinifera)