PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7726_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 369aa    MW: 42012.1 Da    PI: 4.4938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7726_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11195238654
                                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                           ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  cra_locus_7726_iso_1_len_1525_ver_3 195 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 238
                                          589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-16193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9195238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-4196242No hitNo description
Gene3DG3DSA:4.10.280.106.2E-15196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEYYGYEQEG FMEELLAMRS SHEPWPPGLA INDDFSNING GGGWINRHNE LNYWTDNSML  60
VPQTFEEGYS SNFTIDNQTL LNCSFNELYS SFRDELSPPP EFTDSSYNNN NNNTKFGTPP  120
FPSPEDLSIM EDDVDQLSFL ENCLQKKKEM EPCKMEPSQL SAETAPLPVD FSIGSVGQEK  180
RNKSKKISGQ PSKNLMAERR RRKRLNDRLS MLRSVVPKIS KMDRTSILGD TIDYMKELLE  240
RINQLQEEME MDKVGSSSND QPSLMNIFKD SKPNELLVRN SPKFEVERRN RDTRIEICCA  300
GGKQGLLLST LTTLEALGLE IQQCVISCFA NDFSVQASCS EELEQREILT SEDVKQALFR  360
NAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185QEKRNKSKK
2197204ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094470.11e-117transcription factor bHLH93-like
RefseqXP_027149913.11e-117transcription factor bHLH93-like
SwissprotQ9LSL12e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLI0C0791e-108I0C079_9ROSI; Transcription factor bHLH
TrEMBLJ9UVQ21e-108J9UVQ2_VITVI; Transcription factor bHLH
STRINGXP_010254652.11e-109(Nelumbo nucifera)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]