PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_76806_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Whirly

Protein Properties

Length: 103aa MW: 11549 Da PI: 10.4695

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_76806_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	73	5.1e-23	43	102	1	60
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsat 60 s++k+kaal+ ++v+p+f +l+sg +kl+r G+++l++ +a++er+ydW+k+q+falsat cra_locus_76806_iso_1_len_308_ver_3 43 SIFKGKAALSAEPVMPKFIKLESGGFKLERCGTIMLTFWPAIGERRYDWDKRQKFALSAT 102 79********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	1.0E-27	32	102	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	5.96E-24	37	102	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	3.1E-21	44	102	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
LFGESTNNSK LWRGMTTQTN ISTANPNLSR YGESAAKVFA PYSIFKGKAA LSAEPVMPKF 60 IKLESGGFKL ERCGTIMLTF WPAIGERRYD WDKRQKFALS ATX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	9e-32	32	102	5	75	StWhy2
3n1i_A	9e-32	32	102	5	75	protein StWhy2
3n1j_A	9e-32	32	102	5	75	Protein StWhy2
3n1k_A	9e-32	32	102	5	75	protein StWhy2
3n1l_A	9e-32	32	102	5	75	protein StWhy2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011095185.1	1e-43	single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
Swissprot	D9J034	5e-32	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A022Q835	1e-41	A0A022Q835_ERYGU; Uncharacterized protein
STRING	Migut.C01402.1.p	2e-42	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9782	22	28