PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7663_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 1418aa MW: 152660 Da PI: 5.0749

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7663_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	823	864	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ d + +G++ +k+Ia+ + ++t +c+++++k cra_locus_7663_iso_5_len_4565_ver_3 823 PWTAEEKEIFMDKLATYGKD-FKKIASFLM-HKTTADCVEFYYK 864 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.7	1.8e-10	1042	1082	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++v+av +G++ ++ I+r++ +R++ qc+ ++ cra_locus_7663_iso_5_len_4565_ver_3 1042 DWTDEEKSIFVQAVSSYGKD-FTMISRCIR-TRSRDQCRVFFS 1082 5***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-14	806	868	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-6	816	867	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.425	819	870	IPR017884	SANT domain
SMART	SM00717	1.9E-8	820	868	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-7	822	864	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	10.713	1038	1089	IPR017884	SANT domain
SMART	SM00717	1.5E-8	1039	1087	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.33E-10	1040	1089	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-8	1042	1082	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-6	1042	1083	IPR009057	Homeodomain-like
CDD	cd00167	3.13E-7	1043	1081	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1418 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSEQHHPPHP HPHQIGGGGG FGGVGGFGGG PRWREPLHPH 60 PHPYHYASPR WASSDFRYRP PHGYGKHSGR NPYPEETSHG FMSSRPNDKT LDDESYRASG 120 SGKYSRNNRE SRSSFSQKDW KGHTWEATPS PNGPGRPNDV SDQPRSVDDM HTCNSSNPHS 180 DSANSWDQPQ SKDQHEKNGG VNATASSGPR FERESSLGSW KPLNKWTRSG SLSSRGSGFS 240 HSSSSKSMGA DSSEMKVEVQ PINVTPINSP SGDAAPAAAC EMYVAPSEET NSRKKPRLGW 300 GEGLAKYEKK KVVCVDDTAA AKNGVVICSS NREPVNLLSS SLADKSPGVT GFSDCASPAT 360 PSSVGCSSSP GMEEKQFVKA GTVEQETTNS MVSPGIVSQT RLEDSSFNLE NLDLAPITSL 420 NSAINELLQV DDLSSVDSGF VKSTAISKLL VWKGDVLKAL ELTESEIDKL EGELKLISEP 480 GTSGVHPVAS TSLALDCHPK PADDQDAASD ITPGQSPLEL VSSGGNDVGE MQHTMEVDHA 540 EAKDDNVDSP GSATSKFVEI PTSGKDVSVT QLGGQRTQSK GFEDLGVKCS ECTLNEDKGA 600 EVYASCDGSN LVADGSSTHA DDFSLLCDYD NKLCESILAS NREIANRAAE VFNKLLPPNQ 660 SFFDISSAAG VSCPESTPLI KERLMRRKSS LRLKERVISL KFRALHHLWK DDIRSLSIRK 720 FRVKSQKKFD LSVRAVNGSN QKHRLSIRRL SSAGSLNLTA TPETTDFLSK LISDSQFKPL 780 RNTLKMPALI LDEREKMVSR FISTNGLVED PCGVEKERSM INPWTAEEKE IFMDKLATYG 840 KDFKKIASFL MHKTTADCVE FYYKNHKSDC FKQTKEHSGF VKQGKAQSTN NYLVASGKRW 900 NRECNAASLD ILGAASAIAA NIEVGMEIQQ KCSSKYLAGL SSNCQTSRGN VAVLERSSSL 960 DGDNTDKETV AADVLAGICG SLSSEAMGSC ITSAVDPGEG YHEWKCQKVG STSRWPPTPE 1020 VTQSIDDETC SDESCGEMDP TDWTDEEKSI FVQAVSSYGK DFTMISRCIR TRSRDQCRVF 1080 FSKARKCLGL DMICPGSGNT DVVRNEANGA GSETDDACVV EAVSHMCSVK SGVGTEDLPS 1140 PDVKLNKEPD VAGTVTVQPD INRIEKGTGD LEHVDNAHQP MSKSDDSLVE KPELDVDGDV 1200 AMCMGPSSSR SVAVQDEGTG LASSGEVGNE NAGEANDRPD RSDAEINVGA VDKVAEHHRG 1260 ETDASVQGIP EIGMDVDKDD AAPSKASGRD EEVKSNPEVY TADMGSSSGC DGVSGDQQQA 1320 ELETESAEQP CAIALPENSY SMPTSSASDA PVAVKCTNGL VEHTSPATNI GSTSEGGSQA 1380 SRPGEQHLSK GSLMDGVESS RILKGCYLLP VSTIKQVX

Sequence ? help Back to Top

Protein Sequence Length: 1418 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSEQHHPPHP HPHQIGGGGG FGGVGGFGGG PRWREPLHPH  60
PHPYHYASPR WASSDFRYRP PHGYGKHSGR NPYPEETSHG FMSSRPNDKT LDDESYRASG  120
SGKYSRNNRE SRSSFSQKDW KGHTWEATPS PNGPGRPNDV SDQPRSVDDM HTCNSSNPHS  180
DSANSWDQPQ SKDQHEKNGG VNATASSGPR FERESSLGSW KPLNKWTRSG SLSSRGSGFS  240
HSSSSKSMGA DSSEMKVEVQ PINVTPINSP SGDAAPAAAC EMYVAPSEET NSRKKPRLGW  300
GEGLAKYEKK KVVCVDDTAA AKNGVVICSS NREPVNLLSS SLADKSPGVT GFSDCASPAT  360
PSSVGCSSSP GMEEKQFVKA GTVEQETTNS MVSPGIVSQT RLEDSSFNLE NLDLAPITSL  420
NSAINELLQV DDLSSVDSGF VKSTAISKLL VWKGDVLKAL ELTESEIDKL EGELKLISEP  480
GTSGVHPVAS TSLALDCHPK PADDQDAASD ITPGQSPLEL VSSGGNDVGE MQHTMEVDHA  540
EAKDDNVDSP GSATSKFVEI PTSGKDVSVT QLGGQRTQSK GFEDLGVKCS ECTLNEDKGA  600
EVYASCDGSN LVADGSSTHA DDFSLLCDYD NKLCESILAS NREIANRAAE VFNKLLPPNQ  660
SFFDISSAAG VSCPESTPLI KERLMRRKSS LRLKERVISL KFRALHHLWK DDIRSLSIRK  720
FRVKSQKKFD LSVRAVNGSN QKHRLSIRRL SSAGSLNLTA TPETTDFLSK LISDSQFKPL  780
RNTLKMPALI LDEREKMVSR FISTNGLVED PCGVEKERSM INPWTAEEKE IFMDKLATYG  840
KDFKKIASFL MHKTTADCVE FYYKNHKSDC FKQTKEHSGF VKQGKAQSTN NYLVASGKRW  900
NRECNAASLD ILGAASAIAA NIEVGMEIQQ KCSSKYLAGL SSNCQTSRGN VAVLERSSSL  960
DGDNTDKETV AADVLAGICG SLSSEAMGSC ITSAVDPGEG YHEWKCQKVG STSRWPPTPE  1020
VTQSIDDETC SDESCGEMDP TDWTDEEKSI FVQAVSSYGK DFTMISRCIR TRSRDQCRVF  1080
FSKARKCLGL DMICPGSGNT DVVRNEANGA GSETDDACVV EAVSHMCSVK SGVGTEDLPS  1140
PDVKLNKEPD VAGTVTVQPD INRIEKGTGD LEHVDNAHQP MSKSDDSLVE KPELDVDGDV  1200
AMCMGPSSSR SVAVQDEGTG LASSGEVGNE NAGEANDRPD RSDAEINVGA VDKVAEHHRG  1260
ETDASVQGIP EIGMDVDKDD AAPSKASGRD EEVKSNPEVY TADMGSSSGC DGVSGDQQQA  1320
ELETESAEQP CAIALPENSY SMPTSSASDA PVAVKCTNGL VEHTSPATNI GSTSEGGSQA  1380
SRPGEQHLSK GSLMDGVESS RILKGCYLLP VSTIKQVX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	780	872	3	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	780	872	3	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027155746.1	0.0	uncharacterized protein LOC113756173
TrEMBL	A0A068TU32	0.0	A0A068TU32_COFCA; Uncharacterized protein
STRING	VIT_13s0019g04010.t01	0.0	(Vitis vinifera)