PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7663_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB | ||||||||
Protein Properties | Length: 1720aa MW: 185107 Da PI: 5.3618 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 823 | 864 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ d + +G++ +k+Ia+ + ++t +c+++++k cra_locus_7663_iso_3_len_5588_ver_3 823 PWTAEEKEIFMDKLATYGKD-FKKIASFLM-HKTTADCVEFYYK 864 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 32.4 | 2.2e-10 | 1042 | 1082 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++v+av +G++ ++ I+r++ +R++ qc+ ++ cra_locus_7663_iso_3_len_5588_ver_3 1042 DWTDEEKSIFVQAVSSYGKD-FTMISRCIR-TRSRDQCRVFFS 1082 5*****************99.*********.********8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.54E-14 | 806 | 867 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-6 | 816 | 867 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.425 | 819 | 870 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-8 | 820 | 868 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-7 | 822 | 864 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.713 | 1038 | 1089 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-8 | 1039 | 1087 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-10 | 1040 | 1089 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-8 | 1042 | 1082 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 1042 | 1083 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-7 | 1043 | 1081 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1720 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSEQHHPPHP HPHQIGGGGG FGGVGGFGGG PRWREPLHPH 60 PHPYHYASPR WASSDFRYRP PHGYGKHSGR NPYPEETSHG FMSSRPNDKT LDDESYRASG 120 SGKYSRNNRE SRSSFSQKDW KGHTWEATPS PNGPGRPNDV SDQPRSVDDM HTCNSSNPHS 180 DSANSWDQPQ SKDQHEKNGG VNATASSGPR FERESSLGSW KPLNKWTRSG SLSSRGSGFS 240 HSSSSKSMGA DSSEMKVEVQ PINVTPINSP SGDAAPAAAC EMYVAPSEET NSRKKPRLGW 300 GEGLAKYEKK KVVCVDDTAA AKNGVVICSS NREPVNLLSS SLADKSPGVT GFSDCASPAT 360 PSSVGCSSSP GMEEKQFVKA GTVEQETTNS MVSPGIVSQT RLEDSSFNLE NLDLAPITSL 420 NSAINELLQV DDLSSVDSGF VKSTAISKLL VWKGDVLKAL ELTESEIDKL EGELKLISEP 480 GTSGVHPVAS TSLALDCHPK PADDQDAASD ITPGQSPLEL VSSGGNDVGE MQHTMEVDHA 540 EAKDDNVDSP GSATSKFVEI PTSGKDVSVT QLGGQRTQSK GFEDLGVKCS ECTLNEDKGA 600 EVYASCDGSN LVADGSSTHA DDFSLLCDYD NKLCESILAS NREIANRAAE VFNKLLPPNQ 660 SFFDISSAAG VSCPESTPLI KERLMRRKSS LRLKERVISL KFRALHHLWK DDIRSLSIRK 720 FRVKSQKKFD LSVRAVNGSN QKHRLSIRRL SSAGSLNLTA TPETTDFLSK LISDSQFKPL 780 RNTLKMPALI LDEREKMVSR FISTNGLVED PCGVEKERSM INPWTAEEKE IFMDKLATYG 840 KDFKKIASFL MHKTTADCVE FYYKNHKSDC FKQTKEHSGF VKQGKAQSTN NYLVASGKRW 900 NRECNAASLD ILGAASAIAA NIEVGMEIQQ KCSSKYLAGL SSNCQTSRGN VAVLERSSSL 960 DGDNTDKETV AADVLAGICG SLSSEAMGSC ITSAVDPGEG YHEWKCQKVG STSRWPPTPE 1020 VTQSIDDETC SDESCGEMDP TDWTDEEKSI FVQAVSSYGK DFTMISRCIR TRSRDQCRVF 1080 FSKARKCLGL DMICPGSGNT DVVRNEANGA GSETDDACVV EAVSHMCSVK SGVGTEDLPS 1140 PDVKLNKEPD VAGTVTVQPD INRIEKGTGD LEHVDNAHQP MSKSDDSLVE KPELDVDGDV 1200 AMCMGPSSSR SVAVQDEGTG LASSGEVGNE NAGEANDRPD RSDAEINVGA VDKVAEHHRG 1260 ETDASVQGIP EIGMDVDKDD AAPSKASGRD EEVKSNPEVY TADMGSSSGC DGVSGDQQQA 1320 ELETESAEQP CAIALPENSY SMPTSSASDA PVAVKCTNGL VEHTSPATNI GSTSEGGSQA 1380 SRPVSTIKQV SGDGISKRSA TLQSIPKSDK NFHDDRNSSC DTYLRKCNGA KQPTSTSVSE 1440 LPCQSQPQST DNIHISSSSD SEKPHRNGDF KLFGQILVKP SSQQKATSST QQNGNNENQH 1500 LKIGKSVVAK FSGGDQSVNG NSIQTKLDRN NFIGPENLPV RSYGLWNAGR TQNGFSSLPD 1560 SAMLLAKYPA AFSSFATPME QLPLQGMNGG GERSLNGPTF AARDIDSSNG ADFQVYSNRE 1620 AQPFTLDVKQ RQDMLLPDVQ RRNGFDVVSG MQQAAGGMVG MNVGGRGGIL VGGQCNSNGV 1680 SDPVAAIKMH YAQVEQFNGQ AGNNIMRDDD SWRGKSNIGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 3e-16 | 780 | 872 | 3 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 3e-16 | 780 | 872 | 3 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027155746.1 | 0.0 | uncharacterized protein LOC113756173 | ||||
TrEMBL | A0A068TU32 | 0.0 | A0A068TU32_COFCA; Uncharacterized protein | ||||
STRING | VIT_13s0019g04010.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |