PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7653_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 303aa MW: 33329.4 Da PI: 5.615

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7653_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.2e-05	195	236	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+R ++++ Lr ++P a ++ ++ +++L +Av+Y+ksL cra_locus_7653_iso_2_len_1863_ver_3 195 ERKRL-KMRKMVRALRGIVPGA---NQMNMNTVAVLDEAVRYLKSL 236 55554.68889999******...9999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.518	185	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-7	195	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.36E-5	195	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.4E-7	196	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MHSNQPFPPL DPLWGSANNA GGYVLNSHVP PIFGGTVLPS GTTIPFPSLH GCQFQPSEAC 60 PKNFIIFDRT DNRRQIMFHP AIGGKFCYAA GQNDVAPHYG DSAYVGFDVA DNEQREVTSS 120 LKEDSDDIDA LLSFDEEEQD ESDEEVSTAR TDVNRGNNSP DSCHNYESTP PRKKRVTSLK 180 RNSGGNVNDS GCNNERKRLK MRKMVRALRG IVPGANQMNM NTVAVLDEAV RYLKSLKVEM 240 QKLGGGEIKE VYLERLLLLL PLHLLLDSVN VHTGKWSTGT PAAPSLCGFS SSSLVNEVEL 300 YVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	201	RKRLKMR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087451.1	2e-84	transcription factor bHLH144-like
Refseq	XP_027087452.1	2e-84	transcription factor bHLH144-like
TrEMBL	A0A068VHI3	4e-83	A0A068VHI3_COFCA; Uncharacterized protein
STRING	XP_009801820.1	8e-69	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8124	19	24