PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7653_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 23204.8 Da PI: 4.8638 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 2.9e-05 | 101 | 142 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+R ++++ Lr ++P a ++ ++ +++L +Av+Y+ksL cra_locus_7653_iso_1_len_1226_ver_3 101 ERKRL-KMRKMVRALRGIVPGA---NQMNMNTVAVLDEAVRYLKSL 142 55554.68889999********...9999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.518 | 91 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-4 | 101 | 145 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-8 | 101 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-7 | 102 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTVGTIAYYQ XDASLSDNEQ REVTSSLKED SDDIDALLSF DEEEQDESDE EVSTARTDVN 60 RGNNSPDSCH NYESTPPRKK RVTSLKRNSG GNVNDSGCNN ERKRLKMRKM VRALRGIVPG 120 ANQMNMNTVA VLDEAVRYLK SLKVEMQKLG GGEIKEVYLE RLLLLLPLHL LLDSVNVHTG 180 KWSTGTPAAP SLCGFSSSSL VNEVELYVM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 107 | RKRLKMR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087451.1 | 5e-46 | transcription factor bHLH144-like | ||||
Refseq | XP_027087452.1 | 5e-46 | transcription factor bHLH144-like | ||||
TrEMBL | A0A068VHI3 | 1e-44 | A0A068VHI3_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_015098m | 8e-38 | (Manihot esculenta) |