PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_762_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28457.7 Da    PI: 9.7984
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_762_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30959151
                                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                        krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  cra_locus_762_iso_9_len_1126_ver_3  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLFEYAT 59
                                        79***********************************************86 PP
2K-box106.82.5e-358617412100
                               K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                                         +++ s++ e+akLk++ie Lqr+qRh++GedLe+Lsl+eLq+Le+qL+ +lk+iRskKn+l++e+i+elqkk k+
  cra_locus_762_iso_9_len_1126_ver_3  86 ETQGSWSLEHAKLKARIEVLQRNQRHYMGEDLENLSLRELQNLEHQLDVALKHIRSKKNQLMFESISELQKKDKA 160
                                         56789********************************************************************** PP

                               K-box  87 lqeenkaLrkklee 100
                                         lqe+n+ L kk++e
  cra_locus_762_iso_9_len_1126_ver_3 161 LQEQNNILAKKVKE 174
                                         ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.674161IPR002100Transcription factor, MADS-box
CDDcd002651.32E-36261No hitNo description
SuperFamilySSF554553.53E-29264IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.31188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSN KGKLFEYATD  60
SAWRGSSNDM KGTLMQKDKW GXTDIETQGS WSLEHAKLKA RIEVLQRNQR HYMGEDLENL  120
SLRELQNLEH QLDVALKHIR SKKNQLMFES ISELQKKDKA LQEQNNILAK KVKEKEKALA  180
QQSEEEQQQN HELNSSSFLL SQPLNSLNIS EAYQRGGENE GEQQGTSRHL QNSGAMPPWM  240
LSHINXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20180172MEF2C
5f28_B1e-20180172MEF2C
5f28_C1e-20180172MEF2C
5f28_D1e-20180172MEF2C
6bz1_A1e-20181173MEF2 CHIMERA
6bz1_B1e-20181173MEF2 CHIMERA
6bz1_C1e-20181173MEF2 CHIMERA
6bz1_D1e-20181173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625854.11e-119PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-106AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLX5DS601e-121X5DS60_COFAR; FUL
STRINGXP_009625854.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]