PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7618_iso_8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 218aa MW: 25403.2 Da PI: 7.8109 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.8e-12 | 16 | 97 | 7 | 98 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 ++vl ++ l++p +f e s ++++++ g+sW + + +k +++ +l +GW++F + + + g ++F cra_locus_7618_iso_8_len_1837_ver_3 16 DNYVLCHHKLRMPDEFDGE------LSDLIKITTPVGESWHIGV--EKVGETLLLHDGWQKFMEHHSVGRGYYLIF 83 6789999999999999633......45579**************..****************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 ++g+s+f v++f+ cra_locus_7618_iso_8_len_1837_ver_3 84 NYEGNSKF--DVHIFD 97 ****9999..999987 PP | |||||||
2 | B3 | 59.3 | 6.9e-19 | 121 | 212 | 4 | 97 |
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 v+++ ++l++ + +p +f ++h +++ e ++l+d++g++W v++ +r+ +++ +l+kGW++F+++++L cra_locus_7618_iso_8_len_1837_ver_3 121 VTMRRYNLRKsFVVGIPCEFSNKHPLNNVE--NIMLQDSDGKEWPVRC-IRRLGKAAWLSKGWRNFAQEKKLVC 191 455566665525568*********888777..5***************.57777789***************** PP T-EEEEEE-SS.SEE..EEEEE CS B3 77 gDfvvFkldgr.sefelvvkvf 97 gD++ F+l++ + f ++++vf cra_locus_7618_iso_8_len_1837_ver_3 192 GDVCCFELIQGnEPF-FKISVF 212 *******99753555.566555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-13 | 10 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-9 | 10 | 97 | No hit | No description |
PROSITE profile | PS50863 | 11.124 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.014 | 11 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-14 | 11 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-8 | 16 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.47E-23 | 113 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-24 | 113 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.26E-19 | 117 | 213 | No hit | No description |
SMART | SM01019 | 5.5E-14 | 119 | 215 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 119 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-16 | 121 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MKPSTAWPES FFRIIDNYVL CHHKLRMPDE FDGELSDLIK ITTPVGESWH IGVEKVGETL 60 LLHDGWQKFM EHHSVGRGYY LIFNYEGNSK FDVHIFDLTC VQIQYPVTIN ARKPENPSFT 120 VTMRRYNLRK SFVVGIPCEF SNKHPLNNVE NIMLQDSDGK EWPVRCIRRL GKAAWLSKGW 180 RNFAQEKKLV CGDVCCFELI QGNEPFFKIS VFPAEKKE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-13 | 108 | 212 | 35 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-13 | 108 | 212 | 35 | 140 | B3 domain-containing transcription factor VRN1 |