PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7610_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 16611.9 Da PI: 6.6028 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4.1e-12 | 26 | 54 | 16 | 46 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++G++ W++Ia++++ gRt++++k++w++ cra_locus_7610_iso_6_len_1377_ver_3 26 AAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 54 5799***.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.417 | 1 | 60 | IPR017930 | Myb domain |
CDD | cd00167 | 5.78E-9 | 25 | 54 | No hit | No description |
Pfam | PF00249 | 3.4E-10 | 26 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.58E-10 | 26 | 63 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.2E-14 | 27 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MAELPSTGRS EGKYNTGGAV VDHGAAAKWG NRWSKIAKHL PGRTDNEIKN YWRTRIQKHI 60 KQAENNFTGQ SSNEQNHDQG STSQMSTTSS SHHHHNHAGG GGGGDAVETY SPPSYQANFE 120 AAFQNPFPTD QSTDNIWSME DLWPMQLLSG D |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022884021.1 | 2e-46 | myb-related protein 305-like | ||||
Refseq | XP_027073189.1 | 1e-46 | myb-related protein 305-like | ||||
Swissprot | P81391 | 3e-37 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A068U0Q2 | 3e-45 | A0A068U0Q2_COFCA; Uncharacterized protein | ||||
STRING | XP_009618404.1 | 1e-42 | (Nicotiana tomentosiformis) |
Publications ? help Back to Top | |||
---|---|---|---|
|