PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_758_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 186aa MW: 21604.8 Da PI: 10.3282

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_758_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.6	7e-07	35	112	5	88
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr.tgCkaklkvkkekdgkwev 78 e++ + G+ v+++ks++ + + C + g ++++k +e++r+++a +r ++C + kk +d++w++ cra_locus_758_iso_2_len_1302_ver_3 35 EFGASQGYVVTIKKSRRD------RRVILGCDRGGVYRNRRKMDESKRKRKACSRlINCPFEAIGKK-DDDVWVL 102 567778888888887777......46679****99998888677776666555379998865555.5** PP FAR1 79 tkleleHnHe 88 t + eHnHe cra_locus_758_iso_2_len_1302_ver_3 103 TIRNGEHNHE 112 *******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-5	35	112	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0004491	Molecular Function	methylmalonate-semialdehyde dehydrogenase (acylating) activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MELQSQSEAT DEKLMLPPPP GTFEDREELI KHVREFGASQ GYVVTIKKSR RDRRVILGCD 60 RGGVYRNRRK MDESKRKRKA CSRLINCPFE AIGKKDDDVW VLTIRNGEHN HEPLKDMSEH 120 PYSRRFTEDE VKQIKQMTEA GVKPRQVLKA LKQSNPELQS TPRHLYNLKA KIRQGKLPGY 180 SFGFVP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179288.1	1e-114	methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like
TrEMBL	A0A0C5E3I5	1e-121	A0A0C5E3I5_CATRO; Aldehyde dehydrogenase 1
STRING	XP_009364800.1	1e-104	(Pyrus x bretschneideri)
STRING	Gorai.011G109400.1	1e-104	(Gossypium raimondii)
STRING	EOX91899	1e-104	(Theobroma cacao)
STRING	cassava4.1_025850m	1e-106	(Manihot esculenta)
STRING	XP_010113471.1	1e-106	(Morus notabilis)