PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7552_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 424aa    MW: 46021.5 Da    PI: 5.6495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7552_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21244293255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          +y+GVr+++ +g+W+AeIrdp     +  r++lg+f taeeAaka+++a+k+++g
  cra_locus_7552_iso_6_len_1881_ver_3 244 RYRGVRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAAKAYDEAAKRIRG 293
                                          7********.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32244301IPR001471AP2/ERF domain
SMARTSM003801.3E-39244307IPR001471AP2/ERF domain
PROSITE profilePS5103224.263244301IPR001471AP2/ERF domain
PfamPF008471.1E-14244293IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22244301IPR016177DNA-binding domain
PRINTSPR003671.7E-11245256IPR001471AP2/ERF domain
CDDcd000181.20E-25252300No hitNo description
PRINTSPR003671.7E-11267283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MCLLKVASRR DSGDYVRRNS RSESTATTAT ATASTNLEGG QQQQQQPQQQ QEFGQSRNFL  60
TAEELQQLEQ TDYLLSMAAP MFPAYSQTRE MSEIVAALTN VVSGQRSSAG ELNFNRPELI  120
SGGGGAGAGG AAANSPSSAY SSSSSGSWAG QKRGRGDQDD TVSGFPERVF RGFDEFRAGD  180
SSSSAIPPAH DEAVSHVMTP TTTTTTASTV TTTVRGRNPP QEAPAAAAGA TSSFDQESGE  240
RRRRYRGVRQ RPWGKWAAEI RDPHKGVRVW LGTFNTAEEA AKAYDEAAKR IRGDKAKLNF  300
PPPDQHHHHH PPPPLPPPPL LHTPQPSPKR RCTEMPPPVM DYYAPATNMT PYDDLKDQFS  360
SLESFLGLEP EITTLSSSTT MTTTTSSTAG NEFVGGMNES DPVDLWMMNE LVSVQGQNNQ  420
DFLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22245301663ATERF1
3gcc_A4e-22245301663ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244ERRRRY