PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7552_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23978.7 Da PI: 6.6342 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.9 | 1.9e-21 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + r++lg+f taeeAaka+++a+k+++g cra_locus_7552_iso_2_len_992_ver_3 35 RYRGVRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAAKAYDEAAKRIRG 84 7********.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-39 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-23 | 35 | 92 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-15 | 35 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-33 | 35 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.263 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-12 | 36 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.40E-27 | 43 | 91 | No hit | No description |
PRINTS | PR00367 | 5.6E-12 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
VTTTVRGRNP PQEAPAAAAG ATSSFDQESG ERRRRYRGVR QRPWGKWAAE IRDPHKGVRV 60 WLGTFNTAEE AAKAYDEAAK RIRGDKAKLN FPPPDQHHHH HPPPPLPPPP LLHTPQPSPK 120 RRCTEMPPPV MDYYAPATNM TPYDDLKDQF SSLESFLGLE PEITTLSSST TMTTTTSSTA 180 GNEFVGGMNE SDPVDLWMMN ELVSVQGQNN QDFLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 36 | 92 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-23 | 36 | 92 | 6 | 63 | ATERF1 |
3gcc_A | 3e-23 | 36 | 92 | 6 | 63 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 35 | ERRRRY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027115979.1 | 6e-52 | ethylene-responsive transcription factor RAP2-3-like isoform X1 | ||||
Refseq | XP_027121050.1 | 6e-52 | ethylene-responsive transcription factor RAP2-3-like isoform X1 | ||||
Swissprot | P42736 | 4e-40 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A068TRG9 | 1e-49 | A0A068TRG9_COFCA; Uncharacterized protein | ||||
STRING | Gorai.011G193600.1 | 2e-47 | (Gossypium raimondii) |