PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7550_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 259aa MW: 28829.5 Da PI: 9.0306

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7550_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.6e-14	190	233	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rrk+kNRe+A rsR+RK+a+ eL +kv Le+eN++Lkke cra_locus_7550_iso_5_len_1335_ver_3 190 RRLRRKIKNRESAARSRARKQAYHNELVTKVSRLEEENTKLKKE 233 689***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-11	186	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.047	188	233	IPR004827	Basic-leucine zipper domain
CDD	cd14707	9.27E-17	190	235	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-12	190	234	No hit	No description
SuperFamily	SSF57959	2.19E-10	190	235	No hit	No description
Pfam	PF00170	3.6E-12	190	234	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	193	208	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGSHGSEHQS HLQPLARQNS WFSLTLDEVE NQLGNLGKPL GSMNLDELLK NVCTAEANQA 60 SGIDIGNPSP VAALQRQASF SLARAFSGKT VDEVWRDIQQ GQKLRSIKEF NAREREPTLG 120 ETTLEDFLVK AGLFVADVAL GPAMALDSAL MTQNFAPMGL SPSPSIDALS DTPLPGRKRD 180 AADIDKTLER RLRRKIKNRE SAARSRARKQ AYHNELVTKV SRLEEENTKL KKEKEFDEIV 240 PYSALPSEPR YQLRRTSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081064.1	1e-134	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027081070.1	1e-134	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027081076.1	1e-134	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027175732.1	1e-134	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_027175740.1	1e-134	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-71	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2G9GW38	1e-125	A0A2G9GW38_9LAMI; Uncharacterized protein
STRING	EOY34324	1e-112	(Theobroma cacao)

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]