PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7532_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 337aa MW: 39145.3 Da PI: 10.1748

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7532_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	150	239	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY+eYA+++GF +r+++ ++s+ +++i +r++ C+k+g+ + k+++ r++r++tr gCka++ vk +k+g cra_locus_7532_iso_3_len_1140_ver_3 150 EFYDEYARRAGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKVKDQNGPLRKHRTSTREGCKAMMLVKVNKSG 223 6***************************************999999********************** PP FAR1 75 kwevtkleleHnHela 90 kw+vt+++++H+H+l cra_locus_7532_iso_3_len_1140_ver_3 224 KWVVTRFVKDHTHPLI 239 ************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-24	150	239	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
XGRGRHMRKR YDFKLLGVIS LISSPIQFTR EQLLAVKSHT QIPTETQKRN NNLRKSPMQN 60 XTETDKTLFA FFSVRRESQS EISRFILLIQ KLANTTSTRR PWLGLSQSQS DTGASPVDDS 120 TQSESVACEE NSVQEPSVGM EFDSEEAAKE FYDEYARRAG FIMRIDQCRR SEVDKRILSR 180 RLSCNKQGYY VKVKDQNGPL RKHRTSTREG CKAMMLVKVN KSGKWVVTRF VKDHTHPLIA 240 SGRSSRNTMD HKDRKIQELT VELERQDKLC DLYREQINSF LKSIEEQTGL VSEKLQAAVK 300 NVRDFEREIQ QQSNQXHFYE VEASRPGIER XQLKDKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092380.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like, partial
Refseq	XP_027174565.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBL	A0A1U7WYX6	1e-105	A0A1U7WYX6_NICSY; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_009779434.1	1e-105	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25