PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_751_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 302aa MW: 33430.7 Da PI: 6.8473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_751_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	118	164	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L cra_locus_751_iso_4_len_1244_ver_3 118 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 164 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	118	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-15	119	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-15	119	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-5	128	167	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.8E-4	201	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MQQQNTTDPY ICGSNSMFPE VSPILPWTLP PVHHHHHQEP FFHHPATSYG GFFNRRPPVP 60 GLQFGYDGSS SDHHLRLISD TALGQVVQSG SAPFGLQAEL QKMTAQEIMD AKALAASKSH 120 SEAERRRRER INNHLAKLRS LLPNTTKTDK ASLLAEVIQH VKELKRQTSL IAESSPVPTE 180 IDELSVDNAS DEDGKFIIKA SLCCEDRSDL LPDLIKTLKA LRLKTLKAEI TTLGGRVRNV 240 LFITSEDDDV VLDQQQQYSI TSIQEALKSV MEKAAGGGDD SASAASVKRQ RTNINILEHR 300 SL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	128	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095453.1	1e-145	transcription factor bHLH30-like isoform X2
Refseq	XP_027095454.1	1e-145	transcription factor bHLH30-like isoform X2
Refseq	XP_027097476.1	1e-145	transcription factor bHLH30-like isoform X2
Refseq	XP_027097477.1	1e-145	transcription factor bHLH30-like isoform X2
Refseq	XP_027153723.1	1e-145	transcription factor bHLH30 isoform X2
Refseq	XP_027153724.1	1e-145	transcription factor bHLH30 isoform X2
Refseq	XP_027153725.1	1e-145	transcription factor bHLH30 isoform X2
Swissprot	Q9S7Y1	1e-104	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2G9I1N8	1e-147	A0A2G9I1N8_9LAMI; Uncharacterized protein
STRING	cassava4.1_010668m	1e-137	(Manihot esculenta)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]