PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_751_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 286aa    MW: 31661.8 Da    PI: 7.0123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_751_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14102148354
                                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  cra_locus_751_iso_3_len_1177_ver_3 102 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 148
                                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.13699148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11102148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-15103168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-5112151No hitNo description
Gene3DG3DSA:3.30.70.2604.4E-4185253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MFPEVSPILP WTLPPVHHHH HQEPFFHHPA TSYGGFFNRR PPVPGLQFGY DGSSSDHHLR  60
LISDTALGQV VQSGSAPFGL QAELQKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA  120
KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAESSP VPTEIDELSV DNASDEDGKF  180
IIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITSE DDDVVLDQQQ  240
QYSITSIQEA LKSVMEKAAG GGDDSASAAS VKRQRTNINI LEHRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077316.11e-143transcription factor bHLH30
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2G9I1N81e-144A0A2G9I1N8_9LAMI; Uncharacterized protein
STRINGGorai.008G186700.11e-136(Gossypium raimondii)
STRINGcassava4.1_010668m1e-136(Manihot esculenta)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]