PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_751_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 301aa    MW: 33293.6 Da    PI: 6.7985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_751_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14117163354
                                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  cra_locus_751_iso_2_len_1241_ver_3 117 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 163
                                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15118170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15118183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-5127166No hitNo description
Gene3DG3DSA:3.30.70.2604.8E-4200268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQQQNTTDPY ICGSNSMFPE VSPILPWTLP PVHHHHQEPF FHHPATSYGG FFNRRPPVPG  60
LQFGYDGSSS DHHLRLISDT ALGQVVQSGS APFGLQAELQ KMTAQEIMDA KALAASKSHS  120
EAERRRRERI NNHLAKLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTSLI AESSPVPTEI  180
DELSVDNASD EDGKFIIKAS LCCEDRSDLL PDLIKTLKAL RLKTLKAEIT TLGGRVRNVL  240
FITSEDDDVV LDQQQQYSIT SIQEALKSVM EKAAGGGDDS ASAASVKRQR TNINILEHRS  300
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077316.11e-144transcription factor bHLH30
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2G9I1N81e-147A0A2G9I1N8_9LAMI; Uncharacterized protein
STRINGPOPTR_0008s11490.11e-137(Populus trichocarpa)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]