PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_751_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 33430.7 Da PI: 6.8473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.8e-14 | 118 | 164 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L cra_locus_751_iso_1_len_1241_ver_3 118 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 164 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.136 | 115 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 118 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-15 | 119 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-15 | 119 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-13 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-5 | 128 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.8E-4 | 201 | 269 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MQQQNTTDPY ICGSNSMFPE VSPILPWTLP PVHHHHHQEP FFHHPATSYG GFFNRRPPVP 60 GLQFGYDGSS SDHHLRLISD TALGQVVQSG SAPFGLQAEL QKMTAQEIMD AKALAASKSH 120 SEAERRRRER INNHLAKLRS LLPNTTKTDK ASLLAEVIQH VKELKRQTSL IAESSPVPTE 180 IDELSVDNAS DEDGKFIIKA SLCCEDRSDL LPDLIKTLKA LRLKTLKAEI TTLGGRVRNV 240 LFITSEDDDV VLDQQQQYSI TSIQEALKSV MEKAAGGGDD SASAASVKRQ RTNINILEHR 300 SL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 128 | ERRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095453.1 | 1e-145 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027095454.1 | 1e-145 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027097476.1 | 1e-145 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027097477.1 | 1e-145 | transcription factor bHLH30-like isoform X2 | ||||
Refseq | XP_027153723.1 | 1e-145 | transcription factor bHLH30 isoform X2 | ||||
Refseq | XP_027153724.1 | 1e-145 | transcription factor bHLH30 isoform X2 | ||||
Refseq | XP_027153725.1 | 1e-145 | transcription factor bHLH30 isoform X2 | ||||
Swissprot | Q9S7Y1 | 1e-104 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A2G9I1N8 | 1e-147 | A0A2G9I1N8_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_010668m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4083 | 24 | 44 |
Publications ? help Back to Top | |||
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