PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7498_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 265aa    MW: 30446.4 Da    PI: 9.7582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7498_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-15113161256
                                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                          y+GVr+++ +g+Wv+eIr p++   r+r +lg+f t  eAa a+++ + kl+ge
  cra_locus_7498_iso_2_len_833_ver_3 113 LYRGVRQRH-WGKWVSEIRLPRK---RTRLWLGTFTT--EAALAYDRQAFKLRGE 161
                                         59******9.**********954...5**********..**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.97E-30112170No hitNo description
SuperFamilySSF541713.07E-18113169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-28113169IPR001471AP2/ERF domain
SMARTSM003802.1E-32113174IPR001471AP2/ERF domain
PROSITE profilePS5103218.597113168IPR001471AP2/ERF domain
PfamPF008471.3E-8114161IPR001471AP2/ERF domain
PRINTSPR003674.1E-12114125IPR001471AP2/ERF domain
PRINTSPR003674.1E-12150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
RPGQDHQLPK MISYDHNLSK TIENKSFPPL MNDQNLPSVQ FRPLKKIKTN SVPLFLPPPP  60
PSRFVFPLSL QEPDQIATIS SWQQKPPEET HNWRRQNMIS FGQMVPLKST SKLYRGVRQR  120
HWGKWVSEIR LPRKRTRLWL GTFTTEAALA YDRQAFKLRG ETAKLNFPHL FLKSAGISNS  180
SAVLTTDNSD QKDCLMKSED GPSNKSIIKD HSDQVSDYKT GNEVPDGFFH EGICGIFNNG  240
INDSDSFPRN PFWDVNISDF LQEYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17109168163ATERF1
3gcc_A1e-17109168163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623980.11e-31PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A2R6QDX27e-33A0A2R6QDX2_ACTCH; Ethylene-responsive transcription factor
STRINGXP_009787574.17e-31(Nicotiana sylvestris)
STRINGXP_009592286.12e-30(Nicotiana tomentosiformis)