PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7498_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 30863.8 Da PI: 9.3479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.3e-15 | 113 | 161 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+Wv+eIr p++ r+r +lg+f t eAa a+++ + kl+ge cra_locus_7498_iso_1_len_1006_ver_3 113 LYRGVRQRH-WGKWVSEIRLPRK---RTRLWLGTFTT--EAALAYDRQAFKLRGE 161 59******9.**********954...5**********..**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.44E-30 | 112 | 170 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-18 | 113 | 169 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-28 | 113 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-32 | 113 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.597 | 113 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-12 | 114 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-8 | 114 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-12 | 150 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
RPGQDHQLPK MISYDHNLSK TIENKSFPPL MNDQNLPSVQ FRPLKKIKTN SVPLFLPPPP 60 PSRFVFPLSL QEPDQIATIS SWQQKPPEET HNWRRQNMIS FGQMVPLKST SKLYRGVRQR 120 HWGKWVSEIR LPRKRTRLWL GTFTTEAALA YDRQAFKLRG ETAKLNFPHL FLKSAGISNS 180 SAVLTTDNSD QKDCLMKSED GPSNKSIIKD HSDQVSDYKT GNEVPDGFFH EGICGIFNNG 240 INDSDSFPRN PFWDVNISDF LQESDIYES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 112 | 168 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-17 | 109 | 168 | 1 | 63 | ATERF1 |
3gcc_A | 1e-17 | 109 | 168 | 1 | 63 | ATERF1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018623980.1 | 8e-32 | PREDICTED: ethylene-responsive transcription factor ERF053-like | ||||
TrEMBL | A0A2R6QDX2 | 5e-33 | A0A2R6QDX2_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_009787574.1 | 6e-31 | (Nicotiana sylvestris) | ||||
STRING | XP_009592286.1 | 1e-30 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |