PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7483_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Trihelix
Protein Properties Length: 597aa    MW: 64638.3 Da    PI: 7.548
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7483_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575.1e-18213299186
                             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrt 72 
                                          +W+++ + +L+ea++e+   l+rg+l++ +Weev++ +  r  + ++s +qCk+k +nl+kryk ++++  ++ 
  cra_locus_7483_iso_6_len_2317_ver_3 213 EWSDSAIACLLEAYTEKFMMLNRGNLRGRDWEEVAAMVseRCDKQSKSVEQCKNKVDNLKKRYKLERHRLTNG- 285
                                          5*************************************666668899*************************9. PP

                             trihelix  73 sessstcpyfdqle 86 
                                            s s++p+f+q+e
  cra_locus_7483_iso_6_len_2317_ver_3 286 GVSASHWPWFKQME 299
                                          566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-20211301No hitNo description
Gene3DG3DSA:3.40.1160.109.4E-73349590IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.078355591IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.14E-58356590IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.93E-118358591No hitNo description
PfamPF006964.2E-24359570IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
XRNYLSPNGL SPFDGFTFAI SRHIQQDXRR HPLHVPDVVC PLTSPSPNPN GXPLTPPSMA  60
SCDDDFSLLG DDTTTATAAT VHPPNPNPNL IHRRQSFTHR NISATGDNDV VSPDADGYSD  120
GGFCSSQPNS KSNNNHNTPS FHVVNVNPYD ADPNPFDTDP VPNKSRLNNN IHSPHDKRTD  180
REEVSDSGTP YPYKRARASS SAGGGDYRKD REEWSDSAIA CLLEAYTEKF MMLNRGNLRG  240
RDWEEVAAMV SERCDKQSKS VEQCKNKVDN LKKRYKLERH RLTNGGVSAS HWPWFKQMEQ  300
IVGNSLSTKT AATTDDDKSG GGPTSSGKQS KRYGSPAASP GGQINNVKSK ATTSARWRRV  360
VFKISGSALA GTAPQNIDPK VAMLIAREVS IACRMGVEVA IVVGGRNFFC GESWVSTTGL  420
DRCTAYQIGM MATVMNSILL QSALEKLGVQ TRVQSAFSMP EVAEPYSRQR AIRHLEKGRV  480
VIFGGIGAGT GNPLFSTDTA AALRASEIHA DAVLKGTNVD GVFVCDPGNN NSVAAEHISF  540
GEWSTIGTPP MDTMAVRFCE DNGISVVIFN IHEPGNISRA LCGEQVGTLI DQTGRVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-623495901239Uridylate kinase
3ek5_B2e-623495901239Uridylate kinase
3ek5_C2e-623495901239Uridylate kinase
3ek5_D2e-623495901239Uridylate kinase
3ek5_E2e-623495901239Uridylate kinase
3ek5_F2e-623495901239Uridylate kinase
3ek6_A2e-623495901239Uridylate kinase
3ek6_B2e-623495901239Uridylate kinase
3ek6_C2e-623495901239Uridylate kinase
3ek6_D2e-623495901239Uridylate kinase
3ek6_E2e-623495901239Uridylate kinase
3ek6_F2e-623495901239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177086.10.0uncharacterized protein LOC113776178 isoform X2
TrEMBLA0A068V3V30.0A0A068V3V3_COFCA; Uncharacterized protein
STRINGXP_009619381.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427