PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7483_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 407aa MW: 44544.1 Da PI: 8.0294 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.8 | 2.8e-18 | 213 | 299 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrt 72 +W+++ + +L+ea++e+ l+rg+l++ +Weev++ + r + ++s +qCk+k +nl+kryk ++++ ++ cra_locus_7483_iso_3_len_1216_ver_3 213 EWSDSAIACLLEAYTEKFMMLNRGNLRGRDWEEVAAMVseRCDKQSKSVEQCKNKVDNLKKRYKLERHRLTNG- 285 5*************************************666668899*************************9. PP trihelix 73 sessstcpyfdqle 86 s s++p+f+q+e cra_locus_7483_iso_3_len_1216_ver_3 286 GVSASHWPWFKQME 299 566679*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.8E-21 | 211 | 301 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 1.0E-5 | 349 | 398 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
XRNYLSPNGL SPFDGFTFAI SRHIQQDXRR HPLHVPDVVC PLTSPSPNPN GXPLTPPSMA 60 SCDDDFSLLG DDTTTATAAT VHPPNPNPNL IHRRQSFTHR NISATGDNDV VSPDADGYSD 120 GGFCSSQPNS KSNNNHNTPS FHVVNVNPYD ADPNPFDTDP VPNKSRLNNN IHSPHDKRTD 180 REEVSDSGTP YPYKRARASS SAGGGDYRKD REEWSDSAIA CLLEAYTEKF MMLNRGNLRG 240 RDWEEVAAMV SERCDKQSKS VEQCKNKVDN LKKRYKLERH RLTNGGVSAS HWPWFKQMEQ 300 IVGNSLSTKT AATTDDDKSG GGPTSSGKQS KRYGSPAASP GGQINNVKSK ATTSARWRRV 360 VFKISGSALA GTAPQNIDPK VAMLIAREVS IACRMGVEND GNCDELX |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027177086.1 | 0.0 | uncharacterized protein LOC113776178 isoform X2 | ||||
TrEMBL | A0A068V3V3 | 0.0 | A0A068V3V3_COFCA; Uncharacterized protein | ||||
STRING | XP_009802965.1 | 1e-132 | (Nicotiana sylvestris) |