PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7403_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 209aa MW: 23134.4 Da PI: 11.0402 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 9.1e-19 | 126 | 159 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG++y++ + cra_locus_7403_iso_2_len_1690_ver_3 126 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 159 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.622 | 120 | 156 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-15 | 120 | 174 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 124 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.3E-15 | 124 | 157 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.25E-13 | 125 | 182 | No hit | No description |
Pfam | PF00320 | 1.5E-16 | 126 | 159 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 126 | 151 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLCPAGSFKD HKTVVNLPAN RSEPGVQKLI GPSFPLPVSR KMRSKRARPN GGRVWSRSPS 60 LTTTETSSIS SSSSYGSSSL SPFVWANPAQ DFELFSTVEK PPVKKQKKKQ QPTADTTTGS 120 QTLRRCSHCQ VQKTPQWRTG PMGPKTLCNA CGVRYKSGRL FPEYRPACSP TFSQEIHSNS 180 HRKVLEMRRK KEGSTGLVET GFTPMVQSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027112156.1 | 2e-73 | GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 3e-47 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A068TLY9 | 4e-72 | A0A068TLY9_COFCA; GATA transcription factor | ||||
STRING | XP_009802570.1 | 5e-63 | (Nicotiana sylvestris) | ||||
STRING | XP_009631302.1 | 7e-63 | (Nicotiana tomentosiformis) |