PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7378_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CO-like
Protein Properties Length: 352aa    MW: 38356.7 Da    PI: 7.0191
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7378_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-072566438
                             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                                         + C+ +++  + lfC++++ ++C +C ++ H         H+
  cra_locus_7378_iso_1_len_1728_ver_3 25 KQCDYCNSAAALLFCRTDSAFMCISCDSKVHATnklgsrqHE 66
                                         68*******9*******************9965556666665 PP
2CCT70.25.2e-24274317144
                                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                          Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+a
  cra_locus_7378_iso_1_len_1728_ver_3 274 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRA 317
                                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-62270IPR000315B-box-type zinc finger
PfamPF006437.8E-62567IPR000315B-box-type zinc finger
PROSITE profilePS501199.1152770IPR000315B-box-type zinc finger
CDDcd000217.19E-92770No hitNo description
PfamPF062036.6E-18274316IPR010402CCT domain
PROSITE profilePS5101716.787274316IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGMQETVGIG GGGKNFPAGW GLVAKQCDYC NSAAALLFCR TDSAFMCISC DSKVHATNKL  60
GSRQHERVWM CEVCEQAPAS VTCKADAAAN FLVPPVHNNG VSENLSTCLA NDSYVTDSSW  120
ISSSDPTAPR VAADGPDLKS MEFLFTDSDN YLDFDYPISS VQQHYSSGND GVVPVQTTKA  180
PPIPTTQLPV AGHSSEKHFE IDFTKSHMTS YNNSYNPHSL SHSVSSSSLD VGVVPDGSCM  240
SEISYPFGSS NTVDMSGSNG NNQGSSTQMV GMDREARVLR YREKRKNRKF EKTIRYASRK  300
AYAETRPRIK GRFAKRADQV VESHIDRIFN PNSASSVTSF IPESRFGVVP SF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072381.11e-137zinc finger protein CONSTANS-LIKE 4-like
TrEMBLA0A068U4411e-136A0A068U441_COFCA; Uncharacterized protein
STRINGVIT_11s0052g01800.t012e-98(Vitis vinifera)