PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7357_iso_7

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 415aa MW: 46998.2 Da PI: 10.2145

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7357_iso_7	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.5e-08	285	331	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ cra_locus_7357_iso_7_len_1735_ver_3 285 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 331 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-4	274	333	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.30E-15	276	324	No hit	No description
SuperFamily	SSF57959	1.04E-5	285	327	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-5	285	328	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
XKKRVRELRR RRQTLEQAQK RRNLQITLPR SYHRERNKGT TASDMANSKG PASVRNLMYN 60 TRNSLLPPKI PFPSIAPSYV DYVPSSAIGQ KGTQKPREGN PHHQRTSSEV IEEQPSWLDE 120 LLNEPETPVR RGGHRRSSSD SFAYIDAVNA INLDYITPNE NKFKHMTPLS SWATQDLDHF 180 RDAQHVSFIP EPNSFGKPKN RAWDANLNSS LHCRGFPSPG NMVKNAGLLR AQQESEVIPS 240 TASEKEDAVE SGPQDSKASS EKKEASHGKP AASETDTKRA KQQFAQRSRV RKLQYIAELE 300 RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLEN LAQEQLIKYL EHEVLEREIA 360 RLRALYQQQQ QPPQKPTTGH RRSSSKDLDQ QLASLSLKQK DATSARDNAS GQLNI

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

XKKRVRELRR RRQTLEQAQK RRNLQITLPR SYHRERNKGT TASDMANSKG PASVRNLMYN  60
TRNSLLPPKI PFPSIAPSYV DYVPSSAIGQ KGTQKPREGN PHHQRTSSEV IEEQPSWLDE  120
LLNEPETPVR RGGHRRSSSD SFAYIDAVNA INLDYITPNE NKFKHMTPLS SWATQDLDHF  180
RDAQHVSFIP EPNSFGKPKN RAWDANLNSS LHCRGFPSPG NMVKNAGLLR AQQESEVIPS  240
TASEKEDAVE SGPQDSKASS EKKEASHGKP AASETDTKRA KQQFAQRSRV RKLQYIAELE  300
RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLEN LAQEQLIKYL EHEVLEREIA  360
RLRALYQQQQ QPPQKPTTGH RRSSSKDLDQ QLASLSLKQK DATSARDNAS GQLNI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113193.1	0.0	uncharacterized protein At4g06598 isoform X1
Refseq	XP_027113196.1	0.0	uncharacterized protein At4g06598 isoform X4
Refseq	XP_027113197.1	0.0	uncharacterized protein At4g06598 isoform X4
Refseq	XP_027113198.1	0.0	uncharacterized protein At4g06598 isoform X4
TrEMBL	A0A2G9GBP7	1e-166	A0A2G9GBP7_9LAMI; Uncharacterized protein
STRING	XP_002533021.1	1e-163	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2765	17	33