PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7331_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 680aa MW: 78703.7 Da PI: 6.5079

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7331_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.5	2.5e-24	70	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.. 72 ++Y+ +A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke cra_locus_7331_iso_1_len_3538_ver_3 70 EYYSIFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEVvd 142 59******************8888.***************************************9987 PP FAR1 73 .dgkwevtkleleHnHela 90 + +w+++++++ HnHel cra_locus_7331_iso_1_len_3538_ver_3 143 gRTQWYISQFSNVHNHELL 161 8889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-22	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.5E-23	293	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	565	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-6	573	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-4	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MATKPLNNIW IRRQQCPCGD WKCYIKYEGD DHAAVGPQSV KNETSITSPL EVVFTPYVGQ 60 IFNTDEEAFE YYSIFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP 120 RDRKSVRCGC DAKLYLTKEV VDGRTQWYIS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ 180 ERILLLSKAG FPVNRILKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTVQ ENDAMLTEKR 240 ENDLLELLES CKTMAQRDDG FVYSYTTDEN GKVENIAWAY GDSVRAFSVF GDVVTFDTTY 300 RSITYNMLLG VWLGINNHGK AVFFGCVLLQ DETSQSFSWA MQVFIQFMSG RPPQTIVTDL 360 DSGLKDALAI EMPNTKHIIS IWQVLQKLSS WFSLLLGLKY TEFKSEFDIL CNLENVEDFE 420 HQWNHLVARF GLGSEKHMAL LFSCRTSWPV CYSQNFFLAH TLTSEYLKSV ETFFKSILDT 480 QSCLQSFFEQ VLITASSGYQ NRGELLYRPL KTCLPLEEHA SSVLTPYAFN AAQNEITQSM 540 QYAITEMANG SYLVRHYKRM ERECLVIWIP EDEQVHCSCK EFEHSGILCR HSLRVLVVKN 600 YFQIPEKYFP LRWRLESSLV PLDNQIIQSH NNEISQVFHS LTASLLSESL ISKERYDFVH 660 TELTKLLSNV RNMPVLDEVP

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MATKPLNNIW IRRQQCPCGD WKCYIKYEGD DHAAVGPQSV KNETSITSPL EVVFTPYVGQ  60
IFNTDEEAFE YYSIFARKNG FSIRKARSTE SQNLGIYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEV VDGRTQWYIS QFSNVHNHEL LEDDQVRLLP AYRKIQEADQ  180
ERILLLSKAG FPVNRILKVL ELEKGVQPGQ LPFIEKDVRN FVRTCKKTVQ ENDAMLTEKR  240
ENDLLELLES CKTMAQRDDG FVYSYTTDEN GKVENIAWAY GDSVRAFSVF GDVVTFDTTY  300
RSITYNMLLG VWLGINNHGK AVFFGCVLLQ DETSQSFSWA MQVFIQFMSG RPPQTIVTDL  360
DSGLKDALAI EMPNTKHIIS IWQVLQKLSS WFSLLLGLKY TEFKSEFDIL CNLENVEDFE  420
HQWNHLVARF GLGSEKHMAL LFSCRTSWPV CYSQNFFLAH TLTSEYLKSV ETFFKSILDT  480
QSCLQSFFEQ VLITASSGYQ NRGELLYRPL KTCLPLEEHA SSVLTPYAFN AAQNEITQSM  540
QYAITEMANG SYLVRHYKRM ERECLVIWIP EDEQVHCSCK EFEHSGILCR HSLRVLVVKN  600
YFQIPEKYFP LRWRLESSLV PLDNQIIQSH NNEISQVFHS LTASLLSESL ISKERYDFVH  660
TELTKLLSNV RNMPVLDEVP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027064893.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_027064894.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_027064895.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_027064896.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2G9GDU3	0.0	A0A2G9GDU3_9LAMI; Uncharacterized protein
STRING	XP_009624952.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]