PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_73018_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 160aa    MW: 18416.3 Da    PI: 6.9353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_73018_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-172465447
                                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                          T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  cra_locus_73018_iso_1_len_478_ver_3 24 LTEVEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 65
                                         699****************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.612115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-5214IPR009057Homeodomain-like
SuperFamilySSF466894.61E-21275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-251571IPR009057Homeodomain-like
PROSITE profilePS5129426.6381670IPR017930Myb domain
SMARTSM007173.3E-152068IPR001005SANT/Myb domain
PfamPF002491.7E-152365IPR001005SANT/Myb domain
CDDcd001675.31E-122566No hitNo description
PROSITE patternPS0015709199IPR020878Ribulose bisphosphate carboxylase, large chain, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015977Biological Processcarbon fixation
GO:0000287Molecular Functionmagnesium ion binding
GO:0003677Molecular FunctionDNA binding
GO:0016984Molecular Functionribulose-bisphosphate carboxylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
RRCGKSCRLR WTNYLRPDLK RGLLTEVEEQ LVIDLHARLG NRWSKIAARL PGRTDNEIKN  60
HWNTHIKKKL VKMGIDPVTH EPLRNEKSEG GDDFDKDDEM QQPKPNSTAS SKQSSCSPTD  120
QNNNSSGESN WKLYENDPLI NSLFGEDFPQ VDIPWEIPSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2127040108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182988.12e-65protein ODORANT1
SwissprotQ50EX61e-57ODO1_PETHY; Protein ODORANT1
TrEMBLA0A059PRE23e-68A0A059PRE2_SALMI; MYB-related transcription factor
STRINGMigut.A00867.1.p1e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]