PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_72631_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 143aa MW: 16125.6 Da PI: 4.6873 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.4 | 2e-17 | 66 | 142 | 3 | 80 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkw 76 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++ + +++etrtgCka++ +++g+w cra_locus_72631_iso_1_len_476_ver_3 66 YCDYAQAMGFNVRRGKQYYFMGTKRVRSKTYCCSKEGVKDDKADA-NGVGYKKPETRTGCKAMISFACDDNGQW 138 99***************************************9988.888899********************** PP FAR1 77 evtk 80 +vtk cra_locus_72631_iso_1_len_476_ver_3 139 KVTK 142 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-14 | 66 | 142 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MENSGLDLER HEPISGDSDE EEAVRPRSGG EVVDVNEGPD EAHVHELEKN LLDQVVYSEE 60 EAYMSYCDYA QAMGFNVRRG KQYYFMGTKR VRSKTYCCSK EGVKDDKADA NGVGYKKPET 120 RTGCKAMISF ACDDNGQWKV TKX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093602.1 | 1e-85 | uncharacterized protein LOC105173527 isoform X1 | ||||
Refseq | XP_011093603.1 | 3e-86 | uncharacterized protein LOC105173527 isoform X2 | ||||
TrEMBL | A0A022QPC4 | 1e-81 | A0A022QPC4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J01148.1.p | 2e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14517 | 7 | 9 |