PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7149_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 706aa MW: 82058.1 Da PI: 6.7247 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.6 | 1.6e-21 | 69 | 156 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgk 75 Yn+YA+++GFsvrk ++k + +g + ++f+C+kegk+ ++++ ++ ++a rt+Cka+++ +++++g cra_locus_7149_iso_4_len_2562_ver_3 69 LYNDYAYKLGFSVRKGRQKCKAGSGIKYLKQFTCYKEGKKCDRRNV--NKCYSKADVRTNCKAMIEFRLNEKGG 140 7**************************************9998766..89999********************* PP FAR1 76 wevtkleleHnHelap 91 w v+k +++HnHel+p cra_locus_7149_iso_4_len_2562_ver_3 141 WTVSKHVTNHNHELCP 156 **************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-19 | 69 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.6E-28 | 278 | 371 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.691 | 556 | 594 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 706 aa Download sequence Send to blast |
MENCGKSVVA SCDELDIADC DVFNSPGVDE DSLKPQECEE EEVSPVTEIC NEHSLVDTTV 60 RSEEDAFELY NDYAYKLGFS VRKGRQKCKA GSGIKYLKQF TCYKEGKKCD RRNVNKCYSK 120 ADVRTNCKAM IEFRLNEKGG WTVSKHVTNH NHELCPANQK HLMRSQRTAT KNHVGNFQEM 180 KDSGISIVDD LTVLKKRVEG SSFADFTSRD VYNSLRSVKS KDLDGEDTNA LIQIFRWRTE 240 NEDDFYFDFE VDCNSSLCSF FWRDGRMKSD YDLFGDLLVY DTTYRTNKYE MICSPFVGMD 300 NHCRNIMFGC GFLKSEKTES FIWLFNTFLK SMKGKHPITL MSNESVAMAA ATGVVFPETR 360 HRLCIWHISE NSKQHLMGLR SKEDFVKLFN HVLKHTDTVS EFEFHWKRLM DNFCCHNDKW 420 LNNLYNMREK WCPAFNKDFF SGGILSSQRS EATHHAIFRR LSKTSTLCDF YRIFVEVISE 480 WRSNENMEDF PCNQGHVEMA LPNSKLLQHA NGIYTIEAYL LFEEQFMKFP EYCQGLVLSN 540 DGQHVYEIWH PDMISIRHTV VFNEHTMCIS CTCKMFNEVG VLCSHCLRIM NFHCVQVIPD 600 KYILKRWKGN REIENAEKVN KKDIEVSSVW RRQMIRKFSD LISASELNVN ARECVQEGFK 660 TMSDKIVADV GSYYVNDLEN EGVSSNIKDP IGSYAKEERN VRKKNC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019197439.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like |